Thank you Paul. I was kindly provided with a script that I can use with Coot’s 'run script' function. I’ll see how that turns out.
Best wishes,
Noor
> On 10 May 2018, at 20:49, Paul Emsley <[log in to unmask]> wrote:
>
>
> On 08/05/18 18:21, Noor Agip wrote:
>>
>> I am trying to use the 'align and mutate’ feature in coot, in order to
>> place the sequence of a subunit in a solved structure (the homologous
>> subunit), and initially it looks like its working, but the numbering
>> of the sequence seems off. Now the protein is 118 residues instead of
>> 115.
>
> Oh dear, that does sound like a bug. Possibly not though, it is intended
> that the align and mutate feature will do deletions also.
>
>> Does anyone know how to deal with this particular problem? My protein
>> has ~8000 residues in total, and I prefer not to mutate (the ones that
>> require mutating) individually.
>>
>
> The scripting interface in coot is quite extensive so you can probably
> avoid a lot of clicking with a bit of scheme or python.
>
> Paul.
>
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