On 08/05/18 18:21, Noor Agip wrote:
>
> I am trying to use the 'align and mutate’ feature in coot, in order to
> place the sequence of a subunit in a solved structure (the homologous
> subunit), and initially it looks like its working, but the numbering
> of the sequence seems off. Now the protein is 118 residues instead of
> 115.
Oh dear, that does sound like a bug. Possibly not though, it is intended
that the align and mutate feature will do deletions also.
> Does anyone know how to deal with this particular problem? My protein
> has ~8000 residues in total, and I prefer not to mutate (the ones that
> require mutating) individually.
>
The scripting interface in coot is quite extensive so you can probably
avoid a lot of clicking with a bit of scheme or python.
Paul.
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