Hi Claudia,
yes, that is correct.
All the masks need to be in the same space and they will all be transformed using the same matrix (or warps) that you provide.
Cheers,
Matteo
> On 4 Apr 2018, at 13:29, Claudia Barth <[log in to unmask]> wrote:
>
> Hi experts,
>
> Within FDT GUI for Probtrackx, I can check the box "seed space is not diffusion" and select the seed to diff transform. I am wondering if this transform is then automatically applied to the target masks as well?
>
> In the documentation it is explicitly stated that seed and target masks need to be in the same space, and they are in my case before the transform. Naturally I would assume that potential transforms will be done to all entered masks.
> However, I would rather know than assume. :) Thus, is this the case or not?
>
> Thanks a lot for your help for such a simple question.
>
> All the best, Claudia
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