Multivariate analysis of ecological communities in R with the VEGAN package (VGNR01)
https://www.prstatistics.com/course/multivariate-analysis-of-ecological-communities-in-r-with-the-vegan-package-vgnr01/
This course will run from the 23rd- 27th April 2018 in Glasgow City Centre and is being delivered by Dr Peter Solymos and Dr Guillaume Blanchet who both author the VEGAN package
Course Overview:
This 5-day course will cover the concepts, methods, and R tools that can be used to analyse community ecology data. The course will review data processing techniques relevant to multivariate data sets. We will cover diversity and null-model analysis, distance measures and distance based multivariate methods, clustering, classification, and dimension reduction techniques using the vegan R extension package. We will use real world data sets to motivate the analyses, e.g. describing patterns along environmental or anthropogenic disturbance gradients, quantifying the effects of continuous and discrete predictors, and making predictions based on multivariate model results. We will emphasize visualization and reproducible workflows. Modules will consist of introductory lectures, guided computer coding, and exercises for the participants. The course is intended for intermediate R users with interest in community ecology, especially in the fields of terrestrial and wetland ecology, microbial ecology, and natural resource management.
Monday 23rd – Classes from 09:00 to 17:00
Module 1: Introduction to community data analysis, basics of programming in R
Module 2: Data processing (long and wide data representations, single and multiple table operations, data aggregation and transformation)
Tuesday 24th – Classes from 09:00 to 17:00
Module 3: Diversity analysis, species-abundance distributions, null-model analysis
Module 4: Distance measures and distance based methods (Mantel test, distance decay, etc.)
Wednesday 25th – Classes from 09:00 to 17:00
Module 5: Hierarchical and nonhierarchical clustering and classification
Module 6: Dispersion and permutational MANOVA
Thursday 26th – Classes from 09:00 to 17:00
Module 7: Response curves, ordination (correspondence analysis, nonmetric scaling, constrained ordination).
Module 8: Fitting environmental variables to ordination, permutation based testing of the significance of constraints.
Friday 27th – Classes from 09:00 to 16:30
Module 9: Indicator species analysis and multivariate calibration.
Modules 10: special topics and discussion, analyzing participants’ own data.
Check out our sister sites;
www.PRstatistics.com (Ecology and life sciences)
www.PRinformatics.com (Bioinformatics and data science)
www.PSstatistics.com (Behaviour and cognition)
Please chare anywhere you see fit.
Email enquiries to [log in to unmask]
Other up coming courses below
1. March 19th – 23rd 2018
BEHAVIOURAL DATA ANALYSIS USING MAXIMUM LIKLIHOOD IN R (BDML01)
Glasgow, Scotland, Dr William Hoppitt
http://www.psstatistics.com/course/behavioural-data-analysis-using-maximum-likelihood-bdml01/
2. April 9th – 13th 2018
NETWORK ANAYLSIS FOR ECOLOGISTS USING R (NTWA02
Glasgow, Scotland, Dr. Marco Scotti
www.prstatistics.com/course/network-analysis-ecologists-ntwa02/
3. April 16th – 20th 2018
INTRODUCTION TO STATISTICAL MODELLING FOR PSYCHOLOGISTS USING R (IPSY01)
Glasgow, Scotland, Dr. Dale Barr, Dr Luc Bussierre
http://www.psstatistics.com/course/introduction-to-statistics-using-r-for-psychologists-ipsy01/
4. April 23rd – 27th 2018
MULTIVARIATE ANALYSIS OF ECOLOGICAL COMMUNITIES USING THE VEGAN PACKAGE (VGNR01)
Glasgow, Scotland, Dr. Peter Solymos, Dr. Guillaume Blanchet
www.prstatistics.com/course/multivariate-analysis-of-ecological-communities-in-r-with-the-vegan-package-vgnr01/
5. April 30th – 4th May 2018
QUANTITATIVE GEOGRAPHIC ECOLOGY: MODELING GENOMES, NICHES, AND COMMUNITIES (QGER01)
Glasgow, Scotland, Dr. Dan Warren, Dr. Matt Fitzpatrick
www.prstatistics.com/course/quantitative-geographic-ecology-using-r-modelling-genomes-niches-and-communities-qger01/
6. May 7th – 11th 2018 ADVANCES IN MULTIVARIATE ANALYSIS OF SPATIAL ECOLOGICAL DATA USING R (MVSP02)
CANADA (QUEBEC), Prof. Pierre Legendre, Dr. Guillaume Blanchet
www.prstatistics.com/course/advances-in-spatial-analysis-of-multivariate-ecological-data-theory-and-practice-mvsp03/
7. May 14th - 18th 2018
INTRODUCTION TO MIXED (HIERARCHICAL) MODELS FOR BIOLOGISTS (IMBR01)
CANADA (QUEBEC), Prof Subhash Lele
www.prstatistics.com/course/introduction-to-mixed-hierarchical-models-for-biologists-using-r-imbr01/
8. May 21st - 25th 2018
INTRODUCTION TO PYTHON FOR BIOLOGISTS (IPYB05)
SCENE, Scotland, Dr. Martin Jones
http://www.prinformatics.com/course/introduction-to-python-for-biologists-ipyb05/
9. May 21st - 25th 2018
INTRODUCTION TO REMOTE SENISNG AND GIS FOR ECOLOGICAL APPLICATIONS (IRMS01)
Glasgow, Scotland, Prof. Duccio Rocchini, Dr. Luca Delucchi
www.prinformatics.com/course/introduction-to-remote-sensing-and-gis-for-ecological-applications-irms01/
10. May 28th – 31st 2018
STABLE ISOTOPE MIXING MODELS USING SIAR, SIBER AND MIXSIAR (SIMM04)
CANADA (QUEBEC) Dr. Andrew Parnell, Dr. Andrew Jackson
www.prstatistics.com/course/stable-isotope-mixing-models-using-r-simm04/
11. May 28th – June 1st 2018
ADVANCED PYTHON FOR BIOLOGISTS (APYB02)
SCENE, Scotland, Dr. Martin Jones
www.prinformatics.com/course/advanced-python-biologists-apyb02/
12. June 12th - 15th 2018
SPECIES DISTRIBUTION MODELLING (DBMR01)
Myuna Bay sport and recreation, Australia, Prof. Jane Elith, Dr. Gurutzeta Guillera
www.prstatistics.com/course/species-distribution-models-using-r-sdmr01/
13. June 18th – 22nd 2018
STRUCTURAL EQUATION MODELLING FOR ECOLOGISTS AND EVOLUTIONARY BIOLOGISTS USING R (SEMR02)
Myuna Bay sport and recreation, Australia, Dr. Jon Lefcheck
www.prstatistics.com/course/structural-equation-modelling-for-ecologists-and-evolutionary-biologists-semr02/
14. June 25th – 29th 2018
SPECIES DISTRIBUTION/OCCUPANCY MODELLING USING R (OCCU01)
Glasgow, Scotland, Dr. Darryl McKenzie
www.prstatistics.com/course/species-distributionoccupancy-modelling-using-r-occu01/
15. July 2nd - 5th 2018
SOCIAL NETWORK ANALYSIS FOR BEHAVIOURAL SCIENTISTS USING R (SNAR01)
Glasgow, Scotland, Prof James Curley
http://www.psstatistics.com/course/social-network-analysis-for-behavioral-scientists-snar01/
16. July 8th – 12th 2018
MODEL BASE MULTIVARIATE ANALYSIS OF ABUNDANCE DATA USING R (MBMV02)
Glasgow, Scotland, Prof David Warton
www.prstatistics.com/course/model-base-multivariate-analysis-of-abundance-data-using-r-mbmv02/
17. July 16th – 20th 2018
PRECISION MEDICINE BIOINFORMATICS: FROM RAW GENOME AND TRANSCRIPTOME DATA TO CLINICAL INTERPRETATION (PMBI01)
Glasgow, Scotland, Dr Malachi Griffith, Dr. Obi Griffith
www.prinformatics.com/course/precision-medicine-bioinformatics-from-raw-genome-and-transcriptome-data-to-clinical-interpretation-pmbi01/
18. July 23rd – 27th 2018
EUKARYOTIC METABARCODING (EUKB01)
Glasgow, Scotland, Dr. Owen Wangensteen
http://www.prinformatics.com/course/eukaryotic-metabarcoding-eukb01/
19. October 8th – 12th 2018
INTRODUCTION TO SPATIAL ANALYSIS OF ECOLOGICAL DATA USING R (ISAE01)
Glasgow, Scotland, Prof. Subhash Lele
https://www.prstatistics.com/course/introduction-to-spatial-analysis-of-ecological-data-using-r-isae01/
20. October 15th – 19th 2018
APPLIED BAYESIAN MODELLING FOR ECOLOGISTS AND EPIDEMIOLOGISTS (ABME
Glasgow, Scotland, Dr. Matt Denwood, Emma Howard
http://www.prstatistics.com/course/applied-bayesian-modelling-ecologists-epidemiologists-abme04/
21. October 29th – November 2nd 2018
PHYLOGENETIC COMPARATIVE METHODS FOR STUDYING DIVERSIFICATION AND PHENOTYPIC EVOLUTION (PCME01)
Glasgow, Scotland, Prof. Subhash Lele
Dr. Antigoni Kaliontzopoulou
https://www.prstatistics.com/course/phylogenetic-comparative-methods-for-studying-diversification-and-phenotypic-evolution-pcme01/
22. November 26th – 30th 2018
FUNCTIONAL ECOLOGY FROM ORGANISM TO ECOSYSTEM: THEORY AND COMPUTATION (FEER
Glasgow, Scotland, Dr. Francesco de Bello, Dr. Lars Götzenberger, Dr. Carlos Carmona
http://www.prstatistics.com/course/functional-ecology-from-organism-to-ecosystem-theory-and-computation-feer01/
23. February 2018 TBC
MOVEMENT ECOLOGY (MOVE02)
Margam Discovery Centre, Wales, Dr Luca Borger, Dr Ronny Wilson, Dr Jonathan Potts
www.prstatistics.com/course/movement-ecology-move01/
--
Oliver Hooker PhD.
PR statistics
2017 publications -
Ecosystem size predicts eco-morphological variability in post-glacial
diversification. Ecology and Evolution. In press.
The physiological costs of prey switching reinforce foraging
specialization. Journal of animal ecology.
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