Hello!
I am new to DTI data analysis and was looking for some input on what commands I should be using to process my DTI data.
The data are kind of old and simply consist of one scan, 58 volumes including three B0 images in the beginning (all acquired A>>P). I also have a magnitude field map and a phase field map.
I know that I cannot use topup, but should I still use eddy rather than eddy_correct? If so, would I apply the preprocessed fieldmap to the eddy output with fugue?
The end-goal is just to run standard TBSS analysis if that provides any context.
Any advice is appreciated.
Amanda
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