Dear FSL users,
I would like to construct a voxel by voxel structural connectivity matrix of the whole brain.
I don't know which of the following is the best option to do this in probtrackx:
- input AAL ROIs as seeds with -matrix1 option and then fdt_matrix1 will be my voxel-wise connectivity matrix
- input AAL ROIs as seeds and GW/WM boundary as termination masks with -matrix3 option
Or maybe there is an alternative option that is better than these two.
Thanks in advance,
Ana
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