Hi
I have a series of T1 images that I have transformed in Freesurfer to
.nii.gz images in talairach space with mri_convert -at
transforms/talairach.xfm. I am using the skull-stripped image brain.mgz
produced by recon-all.
When I view them in freeview they look well-registered, and similarly
when I view them in MRIcron. However, if I use FSLeyes they seem to have
a different origin for each subject, and fslmerge complains that they
have Inconsistent orientations.
Is there any inconsistency that you know of between freeview and FSLeyes?
Helen Beaumont PhD
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