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Subject:

CAT12 preprocessing

From:

Yann Quidé <[log in to unmask]>

Reply-To:

Yann Quidé <[log in to unmask]>

Date:

Wed, 1 Nov 2017 09:53:56 +1100

Content-Type:

multipart/mixed

Parts/Attachments:

Parts/Attachments

text/plain (32 lines) , catlog_1.txt (233 lines) , catlog_2.txt (419 lines) , Unknown Name (4 lines)

Dear Christian,

I am using CAT12 v1204, SPM v6909, Matlab 8.1 (R2013A) on Mac OSX 10.9.5

1) Cross sectional preprocessing

On few subjects, I get this kind of warning: 
"Internal WMH correction for spatial normalization (WMHCstr=0.50):  
WARNING: Uncorrected WM lesions (5.16% of the WM)! “

The preprocessing continues normally, and the average quality assessment indicates, for example:  86.49% (B).        

Is there anything to “fix”? Do I need to include the WMH values to any subsequent analysis? To what extend these WMH are considered fine? I attached a copy of the log for one of my subject (file: catlog_1)

2) Longitudinal preprocessing (2 sessions)

2.a) Related to question 1:
Surprisingly, while they did not show up after the cross-sectional preprocessing stream, some WMH warnings appeared for some subjects (different from those from the cross-sectional stream!) during the longitudinal preprocessing.
Is there anything I can do to potentially solve that?

2.b) Unrelated to question 1:
For 1 subject during the longitudinal stream, the preprocessing is working well for the average and Session 1 scan, but crashes for the Session 2 scan. These scans were normally processed during the cross-sectional pipeline.
Do you have any suggestion on this error? I attached a copy of the log (file: catlog_2).

Thanks for your time.

Cheers,

Yann




                            < M A T L A B (R) >                   Copyright 1984-2013 The MathWorks, Inc.                      R2013a (8.1.0.604) 64-bit (maci64)                              February 15, 2013   To get started, type one of these: helpwin, helpdesk, or demo. For product information, visit www.mathworks.com.   CAT parallel processing with MATLAB PID: 14623 ------------------------------------------------------------------------ CAT12 r1204: 4/12: ./structural/T1/T1_V06/T1_V06_Session1.nii ------------------------------------------------------------------------ APP: Rough bias correction:   Initialize 25s   Estimate background 8s   Initial correction 17s   Refine background 12s   Final correction 12s   Background correction 2s   Final scaling 29s                                                                     106s Coarse affine registration 29s Affine registration 36s SPM preprocessing 1 (estimate): 198s SPM preprocessing 2 (write): 1185s Global intensity correction: 54s SANLM noise correction: 37s Local adaptive segmentation (LASstr=0.50):   Prepare maps 16s   Prepare partitions 31s   Prepare segments (LASmod = 1.09) 208s   Estimate local tissue thresholds 357s   SANLM noise correction for LAS 33s                                                                     650s ROI segmentation (partitioning):   Atlas -> subject space 37s   Major structures 29s   Ventricle detection 39s   Blood vessel detection 34s   WMH detection (WMHCstr=0.50) 165s   Closing of deep structures 13s   Side alignment 37s   Final corrections 41s                                                                     397s Blood vessel correction (BVCstr=0.50): 39s Skull-stripping using graph-cut (gcutstr=0.50):   WM initialisation 42s   GM region growing 14s   GM-CSF region growing 36s   CSF region growing 37s   Ventricle filling 27s                                                                     166s Amap using initial SPM12 segmentations (MRF filter strength 0.05): 139s     AMAP peaks: [CSF,GM,WM] = [0.420.10,0.700.09,0.960.04] Final cleanup (gcutstr=0.50):   Level 1 cleanup (ROI estimation) 36s   Level 1 cleanup (brain masking) 27s   Level 2 cleanup (CSF correction) 16s   Level 3 cleanup (CSF/WM PVE) 22s                                                                     101s Internal WMH correction for spatial normalization (WMHCstr=0.50): WARNING: Uncorrected WM lesions (5.16% of the WM)!                                                                      64s Dartel registration with 1.50 mm on a 1.50 mm Template:   Template: "/Applications/SPM12/toolbox/cat12/templates_1.50mm/Template_1_IXI555_MNI152.nii"     1 | 0.1723 | 548718 0 548718 423.282     2 | 0.1386 | 441369 27710 469078 210.291     3 | 0.1358 | 432512 26547 459059 74.964     4 | 0.1374 | 437603 13737 451340 210.908     5 | 0.1273 | 405394 34229 439623 81.349     6 | 0.1270 | 404326 33362 437688 56.857     7 | 0.1295 | 412540 17469 430008 179.482     8 | 0.1187 | 377972 39130 417102 72.757     9 | 0.1181 | 376043 38921 414963 47.923    10 | 0.1199 | 381682 20419 402101 156.436    11 | 0.1085 | 345475 43009 388484 67.173    12 | 0.1076 | 342540 43791 386331 42.715    13 | 0.1089 | 346757 23121 369878 130.421    14 | 0.0986 | 313903 43090 356993 62.319    15 | 0.0972 | 309502 45237 354739 44.539    16 | 0.0967 | 307937 47808 355745 47.900    17 | 0.0962 | 306229 48397 354626 38.234    18 | 0.0957 | 304845 49530 354374 39.015                                                                     502s   Jacobian determinant (RMS): 0.039 0.041 0.057 0.078 0.107 0.146 | 0.147481            Template Matching: 0.172 0.136 0.127 0.118 0.108 0.097 | 0.095730 Write result maps: 160s Surface and thickness estimation: lh:   Thickness estimation (0.50 mm):     WM distance: 54s     CSF distance: 53s     PBT2x thickness: 36s     Final Corrections: 159s   Create initial surface Setting up... Starting main process... Done with 10 percent. Done with 20 percent. Done with 30 percent. Done with 40 percent. Done with 50 percent. Done with 60 percent. Done with 70 percent. Done with 80 percent. Done with 90 percent. Done with 100 percent. Made 2972 adjustments. Extracting component with largest number of vertices... Vertices: 664952 Triangles: 1330148 Setting up... Starting main process... Done with 10 percent. Done with 20 percent. Done with 30 percent. Done with 40 percent. Done with 50 percent. Done with 60 percent. Done with 70 percent. Done with 80 percent. Done with 90 percent. Done with 100 percent. Made 419 adjustments. Extracting component with largest number of vertices... Vertices: 663620 Triangles: 1327452                                                                      23s   Reduce surface to 100000 faces: Resampled into 228442 polygons. Extract largest of 116 components.   31s   Topology correction and surface refinement find_selfintersections: ....................................................... 37 topological defects 17 self intersection(s) to repair Post-patch: 10 self intersection(s) remaining defects remapped, 9 defect(s) remaining defects remapped, 9 defect(s) remaining defects remapped, 5 defect(s) remaining defects remapped, 3 defect(s) remaining defects remapped, 2 defect(s) remaining defects remapped, 2 defect(s) remaining Resampled into 154524 polygons. Resampled into 241204 polygons.  180s   Spherical mapping with areal smoothing 312s   Spherical registration 492s   Thickness / Depth mapping 1s rh:   Thickness estimation (0.50 mm):     WM distance: 56s     CSF distance: 56s     PBT2x thickness: 38s     Final Corrections: 168s   Create initial surface Setting up... Starting main process... Done with 10 percent. Done with 20 percent. Done with 30 percent. Done with 40 percent. Done with 50 percent. Done with 60 percent. Done with 70 percent. Done with 80 percent. Done with 90 percent. Done with 100 percent. Made 8595 adjustments. Extracting component with largest number of vertices... Vertices: 684984 Triangles: 1370104 Setting up... Starting main process... Done with 10 percent. Done with 20 percent. Done with 30 percent. Done with 40 percent. Done with 50 percent. Done with 60 percent. Done with 70 percent. Done with 80 percent. Done with 90 percent. Done with 100 percent. Made 409 adjustments. Extracting component with largest number of vertices... Vertices: 678086 Triangles: 1356336                                                                      28s   Reduce surface to 100000 faces: Resampled into 233632 polygons. Extract largest of 153 components.   31s   Topology correction and surface refinement find_selfintersections: ....................................................... 26 topological defects 14 self intersection(s) to repair Post-patch: 6 self intersection(s) remaining defects remapped, 3 defect(s) remaining defects remapped, 2 defect(s) remaining Resampled into 155066 polygons. Resampled into 239690 polygons.  145s   Spherical mapping with areal smoothing 304s   Spherical registration 504s   Thickness / Depth mapping 2s Display thickness: /my/path/structural/T1/T1_V06/surf/lh.thickness.T1_V06_Session1 Display thickness: /my/path/structural/T1/T1_V06/surf/rh.thickness.T1_V06_Session1 Surface and thickness estimation: 2583s ROI estimation:   Data mapping to normalized space 199s   ROI estimation of 'hammers' atlas 35s   ROI estimation of 'neuromorphometrics' atlas 54s   ROI estimation of 'lpba40' atlas 13s                                                                     301s Quality check: 81s Developer display mode! Print 'Graphics' figure to:   /my/path/structural/T1/T1_V06/report/catreport_T1_V06_Session1.pdf ------------------------------------------------------------------------ CAT preprocessing takes 115 minute(s) and 49 second(s). Image Quality Rating (IQR): 86.49% (B) Segmentations are saved in /my/path/structural/T1/T1_V06/mri Reports are saved in /my/path/structural/T1/T1_V06/report Labels are saved in /my/path/structural/T1/T1_V06/label Surface measurements are saved in /my/path/structural/T1/T1_V06/surf ------------------------------------------------------------------------
Running 'Longitudinal Rigid Registration' Estimated noise sd for "/my/path/structural/Longitudinal/V16/V16_Session1.nii,1" = 4.82367 Estimated noise sd for "/my/path/structural/Longitudinal/V16/V16_Session2.nii,1" = 5.14629 APP:   Initialize 18s   Estimate background 21s   Initial correction 11s   Refine background 8s   Final correction 9s   Final scaling 53s     APP-noise ~ 16%, APP-bias ~ 88% (BWP-level), APP-inv ~ 0.00  162s Done 'Longitudinal Rigid Registration' Running 'CAT12: Segmentation' ------------------------------------------------------------------------ CAT12 r1204: 1/1: ./structural/Longitudinal/V16/avg_V16_Session1.n ------------------------------------------------------------------------ APPs bias correction:   SPM bias correction (6.00 mm) 86s   SPM bias correction (5.25 mm) 101s   SPM bias correction (4.50 mm) 624s   Postprocessing 33s                                                                      52s   APP bias correction     Initialize 79s     Prepare measures 224s     Smooth values 75s     Estimate bias field 23s                                                                    1329s SANLM denoising (NCstr=-Inf): 159s Internal resampling (1.00x0.50x0.50mm > 0.50x0.50x0.50mm): 30s Coarse affine registration: 104s Affine registration 129s SPM preprocessing 1 (estimate): 237s SPM preprocessing 2 (write): 1459s Global intensity correction: 57s SANLM noise correction: 77s Local adaptive segmentation (LASstr=0.50):   Prepare maps 30s   Prepare partitions 40s   Prepare segments (LASmod = 1.00) 272s   Estimate local tissue thresholds 436s   SANLM noise correction for LAS 51s                                                                     836s ROI segmentation (partitioning):   Atlas -> subject space 71s   Major structures 55s   Ventricle detection 91s   Blood vessel detection 64s   WMH detection (WMHCstr=0.50) 179s   Closing of deep structures 22s   Side alignment 55s   Final corrections 44s                                                                     582s Blood vessel correction (BVCstr=0.50): 34s Skull-stripping using graph-cut (gcutstr=0.50):   WM initialisation 55s   GM region growing 23s   GM-CSF region growing 63s   CSF region growing 62s   Ventricle filling 59s                                                                     266s Amap using initial SPM12 segmentations (MRF filter strength 0.06): 237s     AMAP peaks: [CSF,GM,WM] = [0.45±0.06,0.70±0.09,0.97±0.03] Final cleanup (gcutstr=0.50):   Level 1 cleanup (ROI estimation) 48s   Level 1 cleanup (brain masking) 28s   Level 2 cleanup (CSF correction) 14s   Level 3 cleanup (CSF/WM PVE) 23s                                                                     114s Internal WMH correction for spatial normalization (WMHCstr=0.50): 81s Dartel registration with 1.50 mm on a 1.50 mm Template:   Template: "/Applications/SPM12/toolbox/cat12/templates_1.50mm/Template_1_IXI555_MNI152.nii"     1 | 0.1333 | 424483 0 424483 368.253     2 | 0.1117 | 355672 21735 377407 144.663     3 | 0.1117 | 355714 18280 373994 45.367     4 | 0.1111 | 353708 9615 363323 185.182     5 | 0.1028 | 327356 27071 354427 64.562     6 | 0.1029 | 327640 26009 353649 43.130     7 | 0.1028 | 327416 13626 341042 158.635     8 | 0.0937 | 298341 32331 330672 64.980     9 | 0.0936 | 297921 31540 329461 42.567    10 | 0.0929 | 295847 16675 312522 141.450    11 | 0.0836 | 266191 35386 301577 63.438    12 | 0.0832 | 264914 35071 299985 44.807    13 | 0.0828 | 263659 18601 282260 118.348    14 | 0.0746 | 237711 34305 272016 57.493    15 | 0.0738 | 235146 35142 270288 41.776    16 | 0.0735 | 234175 37028 271203 47.739    17 | 0.0732 | 233043 37296 270339 38.648    18 | 0.0728 | 231972 38092 270064 37.530                                                                     559s   Jacobian determinant (RMS): 0.027 0.025 0.039 0.058 0.082 0.111 | 0.112838            Template Matching: 0.133 0.112 0.103 0.094 0.083 0.074 | 0.072846 Write result maps: 399s Quality check: 89s Print 'Graphics' figure to:   /my/path/structural/Longitudinal/V16/report/catreport_avg_V16_Session1.pdf ------------------------------------------------------------------------ CAT preprocessing takes 91 minute(s) and 33 second(s). Image Quality Rating (IQR): 91.55% (A-) Segmentations are saved in /my/path/structural/Longitudinal/V16/mri Reports are saved in /my/path/structural/Longitudinal/V16/report ------------------------------------------------------------------------ Done 'CAT12: Segmentation' Running 'CAT12: Segmentation' ------------------------------------------------------------------------ CAT12 r1204: 1/2: ./structural/Longitudinal/V16/rV16_Session1.n ------------------------------------------------------------------------ APPs bias correction:   SPM bias correction (6.00 mm) 82s   SPM bias correction (5.25 mm) 93s   SPM bias correction (4.50 mm) 640s   Postprocessing 33s                                                                      45s   APP bias correction     Initialize 77s     Prepare measures 221s     Smooth values 73s     Estimate bias field 24s                                                                    1319s SANLM denoising (NCstr=-Inf): 155s Internal resampling (1.00x0.50x0.50mm > 0.50x0.50x0.50mm): 31s Coarse affine registration: 105s Affine registration 133s SPM preprocessing 1 (estimate): 233s SPM preprocessing 2 (write): 1469s Global intensity correction: 56s SANLM noise correction: 75s Local adaptive segmentation (LASstr=0.50):   Prepare maps 30s   Prepare partitions 40s   Prepare segments (LASmod = 1.00) 255s   Estimate local tissue thresholds 420s   SANLM noise correction for LAS 45s                                                                     796s ROI segmentation (partitioning):   Atlas -> subject space 68s   Major structures 53s   Ventricle detection 56s   Blood vessel detection 55s   WMH detection (WMHCstr=0.50) 171s   Closing of deep structures 20s   Side alignment 52s   Final corrections 43s                                                                     519s Blood vessel correction (BVCstr=0.50): 38s Skull-stripping using graph-cut (gcutstr=0.50):   WM initialisation 55s   GM region growing 22s   GM-CSF region growing 60s   CSF region growing 60s   Ventricle filling 58s                                                                     261s Amap using initial SPM12 segmentations (MRF filter strength 0.06): 242s     AMAP peaks: [CSF,GM,WM] = [0.45±0.06,0.69±0.09,0.97±0.03] Final cleanup (gcutstr=0.50):   Level 1 cleanup (ROI estimation) 44s   Level 1 cleanup (brain masking) 26s   Level 2 cleanup (CSF correction) 13s   Level 3 cleanup (CSF/WM PVE) 21s                                                                     105s Internal WMH correction for spatial normalization (WMHCstr=0.50): 73s Dartel registration with 1.50 mm on a 1.50 mm Template:   Template: "/Applications/SPM12/toolbox/cat12/templates_1.50mm/Template_1_IXI555_MNI152.nii"     1 | 0.1358 | 432480 0 432480 373.574     2 | 0.1136 | 361896 22838 384735 147.487     3 | 0.1138 | 362406 19121 381527 45.331     4 | 0.1134 | 361025 10044 371068 188.016     5 | 0.1049 | 334041 27923 361964 66.337     6 | 0.1050 | 334280 26904 361184 45.066     7 | 0.1050 | 334441 14100 348541 160.861     8 | 0.0957 | 304784 33211 337995 65.729     9 | 0.0956 | 304416 32358 336774 42.614    10 | 0.0950 | 302673 17101 319774 143.502    11 | 0.0855 | 272396 36233 308629 64.325    12 | 0.0851 | 271073 35897 306969 44.744    13 | 0.0848 | 270116 19010 289127 120.173    14 | 0.0765 | 243599 35111 278710 57.645    15 | 0.0757 | 240951 35986 276937 41.907    16 | 0.0753 | 239912 37941 277853 47.678    17 | 0.0750 | 238802 38196 276998 38.840    18 | 0.0747 | 237733 39015 276748 36.782                                                                     516s   Jacobian determinant (RMS): 0.029 0.027 0.042 0.060 0.084 0.114 | 0.115754            Template Matching: 0.136 0.114 0.105 0.096 0.085 0.076 | 0.074655 Write result maps: 336s Surface and thickness estimation: lh:   Thickness estimation (0.50 mm³):     WM distance: 53s     CSF distance: 55s     PBT2x thickness: 32s     Final Corrections: 158s   Create initial surface Setting up... Starting main process... Done with 10 percent. Done with 20 percent. Done with 30 percent. Done with 40 percent. Done with 50 percent. Done with 60 percent. Done with 70 percent. Done with 80 percent. Done with 90 percent. Done with 100 percent. Made 1848 adjustments. Extracting component with largest number of vertices... Vertices: 573038 Triangles: 1146092 Setting up... Starting main process... Done with 10 percent. Done with 20 percent. Done with 30 percent. Done with 40 percent. Done with 50 percent. Done with 60 percent. Done with 70 percent. Done with 80 percent. Done with 90 percent. Done with 100 percent. Made 125 adjustments. Extracting component with largest number of vertices... Vertices: 571912 Triangles: 1143844                                                                      25s   Reduce surface to 100000 faces: Resampled into 224816 polygons. Extract largest of 116 components.   26s   Topology correction and surface refinement find_selfintersections: ....................................................... 13 topological defects 32 self intersection(s) to repair Post-patch: 7 self intersection(s) remaining Resampled into 151406 polygons. Resampled into 232852 polygons.  111s   Spherical mapping with areal smoothing 272s   Spherical registration 417s   Thickness / Depth mapping 1s rh:   Thickness estimation (0.50 mm³):     WM distance: 50s     CSF distance: 56s     PBT2x thickness: 33s     Final Corrections: 161s   Create initial surface Setting up... Starting main process... Done with 10 percent. Done with 20 percent. Done with 30 percent. Done with 40 percent. Done with 50 percent. Done with 60 percent. Done with 70 percent. Done with 80 percent. Done with 90 percent. Done with 100 percent. Made 2043 adjustments. Extracting component with largest number of vertices... Vertices: 577070 Triangles: 1154164 Setting up... Starting main process... Done with 10 percent. Done with 20 percent. Done with 30 percent. Done with 40 percent. Done with 50 percent. Done with 60 percent. Done with 70 percent. Done with 80 percent. Done with 90 percent. Done with 100 percent. Made 127 adjustments. Extracting component with largest number of vertices... Vertices: 576422 Triangles: 1152856                                                                      26s   Reduce surface to 100000 faces: Resampled into 228658 polygons. Extract largest of 150 components.   27s   Topology correction and surface refinement find_selfintersections: ....................................................... 16 topological defects 25 self intersection(s) to repair Post-patch: 4 self intersection(s) remaining Resampled into 153184 polygons. Resampled into 234504 polygons.  111s   Spherical mapping with areal smoothing 275s   Spherical registration 426s   Thickness / Depth mapping 1s Display thickness: /my/path/structural/Longitudinal/V16/surf/lh.thickness.rV16_Session1 Display thickness: /my/path/structural/Longitudinal/V16/surf/rh.thickness.rV16_Session1 Surface and thickness estimation: 2397s ROI estimation:   Data mapping to normalized space 270s   ROI estimation of 'hammers' atlas 13s   ROI estimation of 'neuromorphometrics' atlas 19s   ROI estimation of 'lpba40' atlas 6s                                                                     309s Quality check: 93s Developer display mode! Print 'Graphics' figure to:   /my/path/structural/Longitudinal/V16/report/catreport_rV16_Session1.pdf ------------------------------------------------------------------------ CAT preprocessing takes 133 minute(s) and 3 second(s). Image Quality Rating (IQR): 90.96% (A-) Segmentations are saved in /my/path/structural/Longitudinal/V16/mri Reports are saved in /my/path/structural/Longitudinal/V16/report Labels are saved in /my/path/structural/Longitudinal/V16/label Surface measurements are saved in /my/path/structural/Longitudinal/V16/surf ------------------------------------------------------------------------ ------------------------------------------------------------------------ CAT12 r1204: 2/2: ./structural/Longitudinal/V16/rV16_Session2.n ------------------------------------------------------------------------ SANLM denoising (NCstr=-Inf): 37s Internal resampling (1.00x0.50x0.50mm > 0.50x0.50x0.50mm): 31s WARNING: Detected skull-stripping or strongly masked image. Skip APP.          Use skull-stripped initial affine registration template and          TPM without head tissue (class 4 and 5)!            1.00% zeros, 2 object(s), 16 background region(s)               4 cm³, normalized SD of all tissues 8.36 Coarse affine registration: Initial registration failed use center of mass as AC!                                                                      96s Affine registration 119s SPM preprocessing 1 (estimate): ------------------------------------------------------------------------ CAT Preprocessing error for rV16_Session2: ------------------------------------------------------------------------ First input SUBS must contain positive integer subscripts. ------------------------------------------------------------------------    70 - loadbuf    25 - spm_maff8   963 - cat_run_job    18 - cat_run_newcatch   366 - run_job   155 - cat_run    29 - cfg_run_cm  1688 - local_runcj   959 - cfg_util   458 - fill_run_job   247 - spm_jobman    53 - cat_long_multi_run    29 - cfg_run_cm  1688 - local_runcj   959 - cfg_util   703 - MenuFileRun_Callback    96 - gui_mainfcn    53 - cfg_ui ------------------------------------------------------------------------   Warning:cat_io_report:CATgui: Incomplete report creation in cat_io_report because of incomplete CAT parameters. Error:cat_io_report:dispYoHist: Error in displaying the color histogram of the original image. Error:cat_io_report:dispYmHist: Error in displaying the color histogram of the processed image. Print 'Graphics' figure to:   /my/path/structural/Longitudinal/V16/report/catreport_rV16_Session2.pdf Failed 'CAT12: Segmentation' Error using accumarray First input SUBS must contain positive integer subscripts. In file "/Applications/SPM12/spm_maff8.m" (v6421), function "loadbuf" at line 70. In file "/Applications/SPM12/spm_maff8.m" (v6421), function "spm_maff8" at line 25. In file "/Applications/SPM12/toolbox/cat12/cat_run_job.m" (v1159), function "cat_run_job" at line 963. In file "/Applications/SPM12/toolbox/cat12/cat_run_newcatch.m" (???), function "cat_run_newcatch" at line 18. In file "/Applications/SPM12/toolbox/cat12/cat_run.m" (v1175), function "run_job" at line 366. In file "/Applications/SPM12/toolbox/cat12/cat_run.m" (v1175), function "cat_run" at line 155. No executable modules, but still unresolved dependencies or incomplete module inputs. The following modules did not run: Failed: CAT12: Segmentation Skipped: Apply deformations (many images) Skipped: Move/Delete Files Skipped: Longitudinal Rigid Registration Skipped: CAT12: Segmentation Skipped: CAT12: Segmentation Skipped: Apply deformations (many images) Skipped: Move/Delete Files Skipped: Longitudinal Rigid Registration Skipped: CAT12: Segmentation Skipped: CAT12: Segmentation Skipped: Apply deformations (many images) Skipped: Move/Delete Files Skipped: Longitudinal Rigid Registration Skipped: CAT12: Segmentation Skipped: CAT12: Segmentation Skipped: Apply deformations (many images) Skipped: Move/Delete Files Skipped: Longitudinal Rigid Registration Skipped: CAT12: Segmentation Skipped: CAT12: Segmentation Skipped: Apply deformations (many images) Skipped: Move/Delete Files Failed 'Segment longitudinal data' Error using MATLABbatch system Job execution failed. The full log of this run can be found in MATLAB command window, starting with the lines (look for the line showing the exact #job as displayed in this error message) ------------------ Running job #2 ------------------ The following modules did not run: Failed: Segment longitudinal data

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