I have a issue with FNIRT:
FNIRT creates a file pz1_warpcoef.nii.gz and when I open it is distorted (unrecognizable brain). I upload “fnirt” file in attach.
• In the terminal I write: fnirt --ref=Desktop/MNI152_T1_1mm.nii.gz --in=Desktop/pz/pz1.T1.r.nii.gz --iout=pz1.r.iout --fout=pz1.r.fout
• In the folder I find these files: pz1_to_MNI152_T1_1mm.log; pz1_warpcoef.nii.gz.
Could someone have a look and tell me what I can do to fix this?
Many thanks for the help, and best regards.
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