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Subject:

ARIA crash

From:

"N. El Mammeri" <[log in to unmask]>

Reply-To:

CcpNmr software mailing list <[log in to unmask]>

Date:

Fri, 13 Oct 2017 17:38:19 +0100

Content-Type:

text/plain

Parts/Attachments:

Parts/Attachments

text/plain (102 lines)

Hello everyone,

I am encountering a problem when trying to use Aria2.3 with CCPNMR ; the installation seems correct as indicated by aria's "check.py" output:

<Python version    ok.
Numpy module    ok (numpy)
Tkinter and Tix modules...
Tkinter imported (Tk version 8.500)
Tix imported.

CCPN distribution: ok.
Format converter: ok.
Anaysis: ok.
Matplotlib module (optional)   ok.>


However, the problem occurs while trying to create a new project in Aria. The software simply crashes, as the terminal window displays:

<ARIA Version 2.3.1. Authors: Benjamin Bardiaux, Michael Habeck, Jens Linge,
Therese Malliavin, Sean O'Donoghue, Wolfgang Rieping, and Michael Nilges.

If you use this software, please quote the following reference(s):

Rieping W., Habeck M., Bardiaux B., Bernard A., Malliavin T.E.,
Nilges M.(2007) ARIA2: automated NOE assignment and data integration in NMR
structure calculation. Bioinformatics 23:381-382

(TixForm) Error:Trying to use more than one geometry
          manager for the same master window.
          Giving up after 50 iterations.
2017-10-13 17:37:37.680 Python[565:8434] *** Assertion failure in -[_NSCGSWindow setFrame:], /Library/Caches/com.apple.xbs/Sources/AppKit/AppKit-1504.83.101/CGS.subproj/NSCGSWindow.m:663
2017-10-13 17:37:38.166 Python[565:8434] *** Terminating app due to uncaught exception 'NSInternalInconsistencyException', reason: 'Invalid parameter not satisfying: CGRectContainsRect(CGRectMake((CGFloat)INT_MIN, (CGFloat)INT_MIN, (CGFloat)INT_MAX - (CGFloat)INT_MIN, (CGFloat)INT_MAX - (CGFloat)INT_MIN), frame)'
*** First throw call stack:
(
	0   CoreFoundation                      0x00007fff7d37b57b __exceptionPreprocess + 171
	1   libobjc.A.dylib                     0x00007fff925dc1da objc_exception_throw + 48
	2   CoreFoundation                      0x00007fff7d380132 +[NSException raise:format:arguments:] + 98
	3   Foundation                          0x00007fff7ede7be0 -[NSAssertionHandler handleFailureInMethod:object:file:lineNumber:description:] + 195
	4   AppKit                              0x00007fff7af11485 -[_NSCGSWindow setFrame:] + 252
	5   AppKit                              0x00007fff7afd94f4 _NSCreateWindowWithOpaqueShape2 + 162
	6   AppKit                              0x00007fff7afd8135 -[NSWindow _commonAwake] + 1150
	7   AppKit                              0x00007fff7b68cb96 -[NSWindow _resolveAutomaticEnterFullScreenFlags] + 51
	8   AppKit                              0x00007fff7afd7b5b -[NSWindow makeKeyAndOrderFront:] + 31
	9   Tk                                  0x000000010dbddaa3 XMapWindow + 164
	10  Tk                                  0x000000010db4f2b9 Tk_MapWindow + 178
	11  Tk                                  0x000000010db579e1 TkInstallFrameMenu + 271
	12  Tcl                                 0x000000010da77097 TclServiceIdle + 77
	13  Tcl                                 0x000000010da5dd4f Tcl_ServiceAll + 192
	14  Tcl                                 0x000000010da8d7a2 Tcl_InitNotifier + 1326
	15  CoreFoundation                      0x00007fff7d311de7 __CFRUNLOOP_IS_CALLING_OUT_TO_AN_OBSERVER_CALLBACK_FUNCTION__ + 23
	16  CoreFoundation                      0x00007fff7d311d57 __CFRunLoopDoObservers + 391
	17  CoreFoundation                      0x00007fff7d2f2c5e __CFRunLoopRun + 1214
	18  CoreFoundation                      0x00007fff7d2f2544 CFRunLoopRunSpecific + 420
	19  HIToolbox                           0x00007fff7c851ebc RunCurrentEventLoopInMode + 240
	20  HIToolbox                           0x00007fff7c851cf1 ReceiveNextEventCommon + 432
	21  HIToolbox                           0x00007fff7c851b26 _BlockUntilNextEventMatchingListInModeWithFilter + 71
	22  AppKit                              0x00007fff7adeaa54 _DPSNextEvent + 1120
	23  AppKit                              0x00007fff7b5667ee -[NSApplication(NSEvent) _nextEventMatchingEventMask:untilDate:inMode:dequeue:] + 2796
	24  Tk                                  0x000000010dbdb8a1 TkGenerateButtonEvent + 494
	25  AppKit                              0x00007fff7b0410b6 -[NSApplication _doModalLoop:peek:] + 497
	26  AppKit                              0x00007fff7b221374 __35-[NSApplication runModalForWindow:]_block_invoke + 64
	27  AppKit                              0x00007fff7b03eb98 -[NSApplication runModalForWindow:] + 137
	28  AppKit                              0x00007fff7b21123d __19-[NSAlert runModal]_block_invoke + 158
	29  AppKit                              0x00007fff7b0b711c -[NSAlert runModal] + 125
	30  AppKit                              0x00007fff7b0e4aac __55-[NSPersistentUIRestorer promptToIgnorePersistentState]_block_invoke + 1022
	31  AppKit                              0x00007fff7b0e4671 -[NSApplication _suppressFinishLaunchingFromEventHandlersWhilePerformingBlock:] + 28
	32  AppKit                              0x00007fff7b0e4612 -[NSPersistentUIRestorer promptToIgnorePersistentState] + 237
	33  AppKit                              0x00007fff7adef9d7 -[NSApplication _reopenWindowsAsNecessaryIncludingRestorableState:completionHandler:] + 181
	34  AppKit                              0x00007fff7af2c46e -[NSApplication _sendFinishLaunchingNotification] + 138
	35  AppKit                              0x00007fff7adeadfd _DPSNextEvent + 2057
	36  AppKit                              0x00007fff7b5667ee -[NSApplication(NSEvent) _nextEventMatchingEventMask:untilDate:inMode:dequeue:] + 2796
	37  Tk                                  0x000000010dbdb8a1 TkGenerateButtonEvent + 494
	38  Tk                                  0x000000010dbdbb69 Tk_MacOSXSetupTkNotifier + 395
	39  Tcl                                 0x000000010da5dbe8 Tcl_DoOneEvent + 237
	40  _tkinter.so                         0x000000010d62bcb0 init_tkinter + 10430
	41  Python                              0x000000010cd6d4d4 PyEval_EvalFrameEx + 14624
	42  Python                              0x000000010cd70475 _PyEval_SliceIndex + 485
	43  Python                              0x000000010cd6ce4e PyEval_EvalFrameEx + 12954
	44  Python                              0x000000010cd699be PyEval_EvalCodeEx + 1617
	45  Python                              0x000000010cd703e2 _PyEval_SliceIndex + 338
	46  Python                              0x000000010cd6ce4e PyEval_EvalFrameEx + 12954
	47  Python                              0x000000010cd70475 _PyEval_SliceIndex + 485
	48  Python                              0x000000010cd6ce4e PyEval_EvalFrameEx + 12954
	49  Python                              0x000000010cd699be PyEval_EvalCodeEx + 1617
	50  Python                              0x000000010cd69367 PyEval_EvalCode + 48
	51  Python                              0x000000010cd895dd PyParser_ASTFromFile + 297
	52  Python                              0x000000010cd89680 PyRun_FileExFlags + 133
	53  Python                              0x000000010cd891d1 PyRun_SimpleFileExFlags + 702
	54  Python                              0x000000010cd9ab6a Py_Main + 3094
	55  libdyld.dylib                       0x00007fff92ebd235 start + 1
)
libc++abi.dylib: terminating with uncaught exception of type NSException
Abort>



Does anyone have any idea as to what the issue might be?

I thank you in advance for any insight/suggestion.
Best regards,
Nadia El Mammeri

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