Hello,
This might be fixed by adding
restoredefaultpath;
to the ML_PATHS definition in call_matlab.sh
Kind Regards
Matthew
--------------------------------
Dr Matthew Webster
FMRIB Centre
John Radcliffe Hospital
University of Oxford
> On 11 Sep 2017, at 22:10, Sang-Young Kim <[log in to unmask]> wrote:
>
> Dear FSL experts:
>
> I’m struggling with FIX for many days. The problem is that FIX does not generate filtered_func_data_clean.nii.gz.
> So I found error message in .fix.log file as shown below.
> ****************************************************************
> TR =
>
> 1
>
> Elapsed time is 2.053048 seconds.
> {Error using file_array/permute (line 10)
> file_array objects can not be permuted.
>
> Error in read_gifti_file>gifti_Data (line 191)
> d = permute(reshape(d,fliplr(s.Dim)),length(s.Dim):-1:1);
>
> Error in read_gifti_file>gifti_DataArray (line 122)
> s(1).data = gifti_Data(t,c(i),s(1).attributes);
>
> Error in read_gifti_file (line 45)
> this.data{end+1} = gifti_DataArray(t,uid(i),filename);
>
> Error in gifti (line 74)
> this = read_gifti_file(varargin{1},giftistruct);
>
> Error in ciftiopen (line 16)
> cifti = gifti([tmpname '.gii']);
>
> Error in fix_3_clean (line 48)
> BO=ciftiopen('Atlas.dtseries.nii',WBC);
> }
> **********************************************************************
>
> I’m using MATLAB R2015b and tested "ciftiopen" function directly on the matlab. It worked in matlab.
> But I have no idea why above error came up while running FIX.
>
> Any insights would be greatly appreciated.
>
> Thanks.
>
> Sang-Young Kim, Ph.D.
>
> Postdoctoral Fellow
> Department of Radiology, University of Pittsburgh
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