Hello Keren,
This is something that you would need to do separately after fsl_anat has been run.
Kind Regards
Matthew
--------------------------------
Dr Matthew Webster
FMRIB Centre
John Radcliffe Hospital
University of Oxford
> On 11 Sep 2017, at 06:12, Keren Lesinger <[log in to unmask]> wrote:
>
> thank u for the answers.
> what are the parameters that the flirt option includes fsl_anat? or in order to run the "minimal flirt" I need to run it separately from the fsl_anat?
> thanks again !
> Keren
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