Hi Sjors, Michael,
Like IMOD, relion_image_handler --stats also reports minval and maxval
of 0 and 1.
Strangely, the problem seems to have disappeared spontanenously; i.e.
I'm no longer getting that error.
Not sure what to make of this, but until it reappears there's nothing to
test or fix.
Thanks!
-jh-
On 09/04/2017 03:09 AM, Sjors Scheres wrote:
> Hi John,
> What does the following report?
> relion_image_handler --stats --i mask.mrc
> S
>
> On 09/02/2017 04:23 PM, John Heumann wrote:
>> When trying to do a 3D refinement with a solvent mask using Relion
>> 2.1 downloaded and built August 17 , I'm getting an error at the end
>> of the 1st iteration:
>>
>> MlOptimiser::solventFlatten: ERROR solvent mask should contain values
>> between 0 and 1 only...
>>
>> That seems straightforward enough, but as far as I can tell the mask
>> values akready are all between 0 and 1. E.g. IMOD reports:
>>
>> Minimum density ....................... 0.0000
>> Maximum density ....................... 1.0000
>> Mean density .......................... 0.18984
>>
>> The mask is a mode 2 (32-bit real) file.
>>
>> Any suggestions?
>>
>> Regards,
>> -jh-
>
--
John M. Heumann
Department of Molecular, Cellular, and Developmental Biology
347 UCB, University of Colorado
Boulder, CO 80309-0347
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