Hello Janine,
I have also encountered similar problem with call_fsl at line 36 using FSLNets. Please find the error below
Error using call_fsl (line 36)
FSL call (/bin/sh -c '. /usr/local/fsl/etc/fslconf/fsl.sh; FSLOUTPUTTYPE=NIFTI_PAIR; export FSLOUTPUTTYPE; $FSLDIR/bin/fslmaths
/tmp/tp79663b77_40bb_4815_a4a1_f0bf4e6aa336_vox_p_tstat1 /tmp/tp066e0b15_a5d6_4735_99d7_1ac0f73bf54f') failed, Cannot open volume
/tmp/tp79663b77_40bb_4815_a4a1_f0bf4e6aa336_vox_p_tstat1 for reading!
Error in read_avw (line 24)
[status,output]=call_fsl(command);
Error in nets_glm (line 51)
p_uncorrected(i,:)= read_avw(sprintf('%s_vox_p_tstat%d',fname,i));
Error in my_nets (line 74)
[p_uncorrected,p_corrected]=nets_glm(netmats1,'design.mat','design.con',1); % returns matrices of 1-p
I have checked for tp79663b77_40bb_4815_a4a1_f0bf4e6aa336_vox_p_tstat1 file in /tmp folder but this file does not really exist, instead file by name tp79663b77_40bb_4815_a4a1_f0bf4e6aa336_vox_corrp_tstat1 is available in /tmp. When I open this file the data is only available for a single slice and there is no data corresponding to rest of the voxels of this image.
Kindly provide your valuable inputs to rectify this issue
Regards
Himanshu Joshi
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