I hope I have not missed something that is stunningly obvious.
I would like to be able to use more than one processor on the machine
on which I run FSL.
The fsl_sub script seems to be set up only for SGE and Condor, not for
multicore. I saw in it references to OMP_NUM_THREADS, but in search
the FSL source code and looking in the binary distribution, I do not
find anything to indicate that the FSL utilities are multithreaded.
I have access to machines with 4-56 cores, some in a cluster, some in
labs. I was hoping there was a way to specify manually, either by
command option or environment variable, the number of processors that
could be used on the current machine so that the same script would be
most portable amongst the various installations and Linux versions.
I thought at one point I saw a version of fsl_sub that used GNU
Parallel, but I cannot find it now.
I am not an imager, I just help out with the Linux part when able, so
pardon my ignorance.
Thanks, -- bennet
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