Hi,
I'm trying to run applytopup using these acquisition parameters:
$cat d1_1001_acqParams.txt
0 1 0 0.1
0 -1 0 0.1
But I get this error message:
$applytopup --imain=d1_1001_b0APandPA.nii.gz --inindex=1,2 --datain=test.txt --topup=d1_1001_b0_topup_movpar.txt --out=d1_1001_topupDTI.nii.gz
ApplyTopup:: msg=Mismatched --in and --inindex lists
terminate called after throwing an instance of 'TOPUP::ApplyTopupException'
ApplyTopup:: msg=Mismatched --in and --inindex lists
Any idea what is wrong? Thank you!
Sincerely yours,
Lars M. Rimol, PhD
Senior Researcher
Norwegian Advisory Unit for Functional MRI
Department of Radiology
St. Olav's University Hospital
7006 Trondheim
Norway
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