Dear all,
I have trouble with one patient, in whom I can't get a good brain extraction for SIENAX, since I've always had leptomeninges left. So I had to correct the extracted brain manually in FSLeyes.
What is the way to count SIENAX from manually corrected file? The only way that comes in to my mind is to combine brain BET mask and skull mask into one mask and than count SIENAX on that file.
Could you suggest another way?
Regards,
Gleb
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