Hello Anderson,
I have used the options mentioned below with PALM. I am a little confused with usage of -save1-p and -logp. The output file NPC_TMV_myelin_tfce_npc_fisher_cfwep_c1.nii has a range [0.00 Inf]. Now, i am trying to threshold the output (at p<0.05) to see significant clusters. Is it correct to threshold it at Min=1.3 (which is equal to -log10(0.05)) and Max=6.3 (which is equal to -log10(0.0000005))?
# Configuration file for PALM.
# Version alpha105, running in MATLAB 8.3.0.532 (R2014a).
# 22-May-2017 19:22:17
-i all_FA_skeletonised_PAT32_CON48.nii
-i all_MD_skeletonised_PAT32_CON48_mul_minus1.nii
-i all_MTR_skeletonised_PAT32_CON48.nii
-m 52_pairs_mask.nii
-d design_AGMSbin_AT.mat
-t design_AGMSbin_AT.con
-n 5000
-npc
-o NPC_TMV_myelin
-save1-p
-Tnpc
-logp
-corrcon
Best Wishes
Jay
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