Dear FSL experts,
I would like to perform a one-factor three level; one way between subjects ANOVA using PALM. My design consists of six contrasts, but the output of the command below "palm -i dr_stage2_ic0000.nii -d design.csv -t design.mat -m dr_stage2_ic0000_mask.nii -f design.fts -n 5000 -corrcon -o palm_" is as follows.
Computing p-values.
Saving p-values (uncorrected, and corrected within modality and within contrast).
Saving file: palm__vox_ztstat_uncp_c1
Saving file: palm__vox_ztstat_fwep_c1
Saving file: palm__vox_ztstat_uncp_c2
Saving file: palm__vox_ztstat_fwep_c2
Saving file: palm__vox_ztstat_uncp_c3
Saving file: palm__vox_ztstat_fwep_c3
Saving file: palm__vox_ztstat_uncp_c4
Saving file: palm__vox_ztstat_fwep_c4
Saving file: palm__vox_ztstat_uncp_c5
Saving file: palm__vox_ztstat_fwep_c5
Saving file: palm__vox_ztstat_uncp_c6
Saving file: palm__vox_ztstat_fwep_c6
Saving file: palm__vox_zfstat_uncp_c7
Saving file: palm__vox_zfstat_fwep_c7
Saving p-values (corrected across contrasts).
Saving file: palm__vox_ztstat_cfwep_c1
Saving file: palm__vox_ztstat_cfwep_c2
Saving file: palm__vox_ztstat_cfwep_c3
Saving file: palm__vox_ztstat_cfwep_c4
Saving file: palm__vox_ztstat_cfwep_c5
Saving file: palm__vox_ztstat_cfwep_c6
Saving file: palm__vox_zfstat_cfwep_c7
PFA design.csv, design.mat and design.fts attached and comment what is this seventh contrast for? Kindly pardon if I committed a silly mistake in designing the input files properly..
I was surprised when PALM did not took the design_glm.mat, design_glm.con constructed using Glm (Please find these designs also attached) thus I have used the current files (design.csv, design.mat and design.fts)
Thanking you in anticipation
Regards
Himanshu Joshi
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