Hi,
There should be an output called: epi2struct.nii.gz
You should use that.
All the best,
Mark
> On 21 Apr 2017, at 15:07, Seda Cavdaroglu <[log in to unmask]> wrote:
>
> Hi all,
>
> I need my functional image to be distortion corrected and coregistered to T1 which I will use to feed into my pipeline as a nifti image. When I run epi_reg, I get many output files. Is epi2struct_1vol.nii.gz what I should use in that case?
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