Dear FSL-Experts
I anticipate to conduct a FSL-FIRST analysis and was screening the FSL mailing list for advice.
Based on the FIRST UserGuide you could either reconstruct the meshes in the native space of the images with [--useReconNative --useRigidAlign ]
or in MNI space with [—useReconMNI].
Additionally, there is noted that to remove pose from the meshes you should use —useRigidAlign (with either --useReconNative or --useReconMNI)
Does this mean that if I am not interested in pose of a structure I should run --useReconMNI WITH --useRigidAlign?
This seems not straight forward to me as I would assume that the transformation to MNI space would already take care of this?
Thanks a lot for your help
Sarah
|