Dear All,
I am trying to get FLICA to produce correlation plots and the html report. I am using the following code in my main script
% %% Save results
outdir = '/home/OUTPUT_10_DMNMD_all/';
flica_save_everything(outdir, M, fileinfo);
%%% Produce correlation plots
clear des
des.Subject_Index = (1:size(Y{1},2))';
des.Age = load('age.txt');
des.Group = load('group.txt');
flica_posthoc_correlations(outdir, des);
%% Produce the report using command-line scripts:
cd(outdir)
dos('render_surfaces.sh');
dos('surfaces_to_volumes_all.sh fsaverage5 /usr/local/fsl/data/standard/MNI152_T1_2mm.nii.gz');
dos('render_lightboxes_all.sh');
dos('flica_report.sh')
dos('open index.html')
The age.txt file is just a text file with 1 column containing age values for each participant, and the group.txt file has 1 column of 1s and 2s for each member of groups 1 and 2 respectively.
The error that I am getting is as follows:
Subject_Index, component 0... EPS... PNG.../bin/bash: convert: command not found
Error using flica_posthoc_correlations (line 105)
epstopdf failed
Error in mtl_mdl_DMN_MD_all (line 44)
flica_posthoc_correlations(outdir, des);
Any help would be greatly appreciated. Thank you in advance.
sincerely;
dominic
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