Hi Moises
I am using Nvidia Tesla K40c
The command of probtrackx2_gpu wich i used is shown below :
***********************************************************
probtrackx2_gpu -x
/users/govinda_s/subjects/100307/T1w/Diffusion.bedpostX/nodif_brain_mask
-V 1 -l -f --onewaycondition --omatrix3
--target3=/users/govinda_s/subjects/100307/T1w/Diffusion.bedpostX/nodif_brain_mask
--lrtarget3=/users/govinda_s/subjects/100307/T1w/Diffusion.bedpostX/nodif_brain_mask
--pd -c 0.2 -S 2000 --steplength=0.5 -P 5000 --fibthresh=0.01
--distthresh=0.0 --sampvox=0.0 --forcedir --opd -s
/users/govinda_s/subjects/100307/T1w/Diffusion.bedpostX/merged -m
/users/govinda_s/subjects/100307/T1w/Diffusion.bedpostX/nodif_brain_mask
--dir=/users/govinda_s/subjects/IMAGE1
***********************************************************
Joyneel
On 2017-03-12 02:12, Moises Hernandez wrote:
> Hi Joyneel,
> What GPU are you using?
> What arguments are you using for running probtrackx2_gpu?
>
> Moises.
>
> On 11 March 2017 at 20:07, Joyneel Misra
> <[log in to unmask]> wrote:
>
>> Hello all !
>>
>> I have been trying to run tractography on the new HCP1200 data
>> release wich includes bedpostx preprocessed files for each subject.
>> I have installed fsl 5.0.8 on my ubuntu 16.04 machine (source
>> install as i donot have sudo rights) and cuda toolkit 8.0 installed in
>> it.
>> On building fsl, I got the following error :
>>
>> *********************************************************
>> Finished build : end of log file shows ...
>>
>> !!ERROR in BUILD!!
>> Could not make the following projects successfully:
>> extras miscvis
>> ********************************************************
>>
>> I have run probtrackx2 on the cpu, but it takes >2days to run
>> tractography on a single subject bedpostx data. Therefore I downloaded
>> the probtrackx2_gpu executable (from
>> https://users.fmrib.ox.ac.uk/~moisesf/Probtrackx_gpu/ [1]) and tried
>> to run it.
>> However the command gets killed just after a minute after running it
>> everytime i run it.
>>
>> ********************************************************
>> PROBTRACKX2 VERSION GPU
>> Log directory is: /users/govinda_s/subjects/IMAGE1
>> Running in seedmask mode
>> Number of Seeds: 740916
>> 3213 Killed
>> ********************************************************
>>
>> I am entirely new to fsl. I'd appreciate if someone helps me fix
>> this issue.
>> Thanks !
>> Joyneel
>
>
>
> Links:
> ------
> [1] https://users.fmrib.ox.ac.uk/~moisesf/Probtrackx_gpu/
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