Hi,
I think that is the ImageMagick convert command that it cannot find, which we used to include in FSL. So try installing ImageMagick and see if that fixes it.
All the best,
Mark
> On 28 Feb 2017, at 22:01, SUBSCRIBE FSL Isaac <[log in to unmask]> wrote:
>
> Dear FSL experts,
> I am trying to use FLICA on VBM, TBSS and fMRI data. The programme seems to be working well until I attempt to generate the html report. Whenever I try to make this report the command fails at the render_lightbox.sh step. Specifically, the error reads "line 98: convert: command not found".
>
> Is the command convert from another package that I need to download? In stead of convert could I use imread/imwrite commands?
>
> Any help is much appriciated.
> Kind regards,
> Isaac
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