Dear FSL experts,
I ran a two sample t-test with FLAMEO to test for group differences and thresholded with easythresh afterwards. I also computed a onsesample t-test (also in FLAMEO) with behavioral covariate. When I want to threshold the onesample t-test (with easythresh) using the cluster mask from my two sample t-test, I get the following warning:
WARNING:: Inconsistent orientations for individual images in pipeline!
Will use voxel-based orientation which is probably incorrect - *PLEASE CHECK*!
I checked the orientation of both images using fslorient (neurological) and everything looks fine to me in FSLView. Is there something else I should check (also with fslorient)? What could be the reasons for this warning in my case?
Thanks a lot!!
Susanne
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