Dear Dr. Emmanuel,
we have not a field map for using BBR cost function.
Is there any way for registration?
regards
Zeinab Gharaylou
Ph.D. Candidate of NeuroscienceTehran University of Medical Sciences
Tehran, Iran
Email: [log in to unmask]
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On Mon, 12/12/16, Emmanuel Vallee <[log in to unmask]> wrote:
Subject: Re: [FSL] registration question
To: [log in to unmask]
Date: Monday, December 12, 2016, 2:55 PM
Dear Zeinab,
You need to register the mean B0
(or S0) DWI image to the T1 image (in the space where the
parcellation was performed).
For this you can use flirt, with
the BBR cost function. There is a script that performs the
necessary step: epi_reg
Please refer to the relevant FSL
user guide page: http://fsl.fmrib.ox.ac.uk/fsl/fslwiki/FLIRT/UserGuide#epi_reg.
Do not hesitate to come back to
us if you experience any issue or need further
explanations.
Cheers,
Emmanuel
On 12 Dec 2016, at 10:43, Zeinab
Gharaylou <[log in to unmask]>
wrote:
Dear FSL experts,
I am Ph.D. Candidate of Neuroscience. My thesis is
regarding to quantitative analysis of DTI.I have some
problem in registration of images. I want to register
temporal lobe gray matter (achieved by parcellation of T1 by
freesurfer) to FA map (achieved by
camino and corrected by eddy fsl) with FSL. It would be
appreciated if you let me know how I can perform it
correctly. Which steps should be performed?
regards
Zeinab Gharaylou
Ph.D. Candidate of NeuroscienceTehran University of Medical
Sciences
Tehran, Iran
Email: [log in to unmask]
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