Hi
I'm trying to do group level analysis (in order to create group contrasts). I have subjects that have 1 localizer scan and some have 2 localizer scans.
i ran first level analysis on each of the scans (feat directories)
there for I ran second level analysis on these subjects who have 2 localizer scans so each subject has in calculated contrasts across these 2 scans. therefore these subjects have gfeat directories.
Now I would like to do group level analysis based on all the subjects (with 1 localizer and with 2 localizer).
Currently I tried to operate an higher level analysis based on the copes file:
for example:
/media/keren/DATA/keren/PHD/LocalizerMC/oldLocSecondLevel/AR.gfeat/cope1.feat/stats/cope1.nii.gz
/media/keren/DATA/keren/PHD/LocalizerMC/pipeline_NewLOCPipline/AA/AA.feat/reg_standard/stats/cope1.nii.gz
But i get the following message :
"registration has not been run for all the feat directories that you have selected for group analysis.
please turn on and setup registration "
But actually registration was done in the individual level analysis.
How can I create this group level analysis correctly?
Thanks in advance,
Keren
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