Dear J. Vitali,
there are tools that have been mentioned by others, that assist with the
assignment. The final decision depends on you as researcher. You should
visually check the hydrogen bonding whether the boundaries are consistent with
the automated assignment.
People often seem to think that secondary structure is program driven, but
it's your structure that provides that data, and the researcher to make the
final decision.
Kind regards,
Tim
On Sunday 29 January 2017 11:41:49 AM chemocev marker wrote:
> Hi
> Is there any tool that can assign secondary structure to the PDB file. The
> problem is if I used different modelling tools, there are regions in the
> protein which does not remain consistent and looks different in different
> application.
>
> best
>
> J. Vitali
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