Dear Michael,
Ah, I remember you suggested adding this feature and me starting working
on it but it didn't make its way into SPM yet - I'll chase that up.
The following gives you a label for each peak coordinates:
xA = spm_atlas('load','neuromorphometrics');
XYZmm = [TabDat.dat{:,end}];
label = {};
for i=1:size(XYZmm,2)
label{i} = spm_atlas('query',xA,XYZmm(:,i));
end
open label
Best regards,
Guillaume.
On 24/01/17 06:57, MOUTHON Michael wrote:
> Thank Guillaume for this precious info.
>
> Is it a way now to have access to the results of a query in neuromorphometrics atlas thought a Matlab variable or a .txt export readable by Excel ?
>
> Thank again.
>
>
>
>
>
> -----Message d'origine-----
> De : SPM (Statistical Parametric Mapping) [mailto:[log in to unmask]] De la part de Guillaume Flandin
> Envoyé : lundi 23 janvier 2017 12:00
> À : [log in to unmask]
> Objet : Re: [SPM] Neuromorphometrics
>
> Dear Marieke,
>
> When you right click on a peak coordinates, it will display the corresponding label for that given location in the atlas and a subsequent menu will list the proportions of the intersecting regions with a 10mm radius sphere centred around that location.
>
> When you right click on a cluster size, it will list the proportions of the intersection of the corresponding cluster with the regions defined in the atlas.
>
> Best regards,
> Guillaume.
>
>
> On 23/01/17 09:31, Marieke Blom - Smink wrote:
>> Dear SPM experts,
>>
>>
>>
>> I would like to report anatomical labels of significantly activated
>> brain clusters using the normalized Neuromorphometrics atlas. When
>> right-clicking on the MNI coordinates, the anatomical labels are
>> provided together with percentages, for example: Right ITG (55.2%),
>> Right Cerebral White Matter (30.2%), Right MTG (13.5%), Right FuG
>> (1.0%). Could you please explain what these percentages mean? Do they
>> reflect the proportion of the activated cluster localized in each
>> anatomical region? Or do they represent the probability that the
>> activated cluster falls into that particular region?
>>
>>
>>
>> Thank you!
>>
>>
>>
>> Kind regards,
>>
>>
>>
>> Marieke Blom-Smink
>>
>> Junior researcher
>>
>>
>>
>> Westersingel
>>
>>
>>
>> RoNeRes-Rotterdam Neurorehabilitation Research
>>
>>
>>
>>
>>
>>
>>
>>
>> www.rijndam.nl <http://www.rijndam.nl/>
>>
>>
>>
>>
>>
>>
>>
>> http://twitter.com/rijndam_rc
>> <http://twitter.com/rijndam_rc>
>> https://www.facebook.com/Rijndamrevalidatiecentrum
>> <https://www.facebook.com/Rijndamrevalidatiecentrum>
>> http://www.youtube.com/channel/UC_SbB6rwxtYKsfqfM6vbEAQ
>> <http://www.youtube.com/channel/UC_SbB6rwxtYKsfqfM6vbEAQ>
>>
>>
>>
>>
>>
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>>
>
> --
> Guillaume Flandin, PhD
> Wellcome Trust Centre for Neuroimaging
> University College London
> 12 Queen Square
> London WC1N 3BG
>
--
Guillaume Flandin, PhD
Wellcome Trust Centre for Neuroimaging
University College London
12 Queen Square
London WC1N 3BG
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