Dear Heidi,
I'm afraid I've never used FEAT so I hope others will be able to comment
here. If the design file contains timing details about trials (onsets,
durations), it should be fairly simple to convert them automatically in
the format SPM expects them.
If your ROIs are defined as binary NIfTI images then, yes, you can use
them directly for time series extractions.
Best regards,
Guillaume.
On 14/12/16 11:19, Jacobs H (NP) wrote:
> Dear Guillaume,
>
> Thank you! Do you know if I can use the design file from FEAT in SPM?
> We have also defined ROIs for each subject, would we be able to use these
> ROIs in SPM?
>
> Many thanks
> Heidi
>
> On 12/13/16, 6:28 PM, "Guillaume Flandin" <[log in to unmask]> wrote:
>
>> Dear Heidi,
>>
>> I don't anticipate any particular problem from using FSL preprocessed
>> data in SPM but it will make your life much easier if you redo the first
>> level modelling in SPM as you will need to provide DCM with
>> ROI-extracted time series and details about your experimental design in
>> a specific format.
>>
>> Best regards,
>> Guillaume.
>>
>>
>> On 13/12/16 10:01, Jacobs H (NP) wrote:
>>> Dear SPM-ers,
>>>
>>> I have data that is completely processed in FSL (preprocessing and first
>>> level analyses).
>>> Now, I would like to run a DCM analyses on this data. What would be the
>>> best way to proceed without redoing everything in SPM.
>>> So how can I create a .mat file containing the task information
>>> (contrasts) and the nifti files?
>>>
>>> Many thanks!
>>> All the best
>>> Heidi
>>
>> --
>> Guillaume Flandin, PhD
>> Wellcome Trust Centre for Neuroimaging
>> University College London
>> 12 Queen Square
>> London WC1N 3BG
>
--
Guillaume Flandin, PhD
Wellcome Trust Centre for Neuroimaging
University College London
12 Queen Square
London WC1N 3BG
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