Dear Ramesh
I hope asker you about segmentation for sub-cortical structures by using FIRST
did i extract brain (BET tool) before segmentation or no
and if i segment image by image or there's another way to segment many images
(i have 200 brain irm images to segment)
best wishes
ATEF
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En date de : Mer 30.11.16, Ramesh Babu <[log in to unmask]> a écrit :
Objet: [FSL] Volume of Hippocampus
À: [log in to unmask]
Date: Mercredi 30 novembre 2016, 8h14
Dear
Experts,
I have performed T1 image segmentation for
sub-cortical structures by using FISRT tool. Then using
fslstats left hippocampus volume was extracted, which is
given below. Please give your suggestion whether this step
is correct or is there any other steps?
[fsl@fslvm6 aju]$ run_first_all -i aju_t1.nii.gz -o aju
[fsl@fslvm6 aju]$ cat aju.logs/*.e*
[fsl@fslvm6 aju]$ fslstats aju_all_fast_firstseg.nii.gz -l
16.5 -u 17.5 -V
3636
3635.944519
Regards
Ramesh
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