> packageVersion("party")
[1] ‘1.1.2’
I downgraded R to version 3.3.0 but I still get the same error.
________________________________________
Von: FSL - FMRIB's Software Library <[log in to unmask]> im Auftrag von Matthew Webster <[log in to unmask]>
Gesendet: Donnerstag, 8. Dezember 2016 12:11
An: [log in to unmask]
Betreff: Re: [FSL] [FSL] AW: fix error No valid labelling file specified
Hello,
Although we haven’t tested fix with 3.3.2 - can you let me know the result of running
packageVersion("party")
at the R prompt?
Kind Regards
Matthew
> On 8 Dec 2016, at 08:26, Parzer, Peter <[log in to unmask]> wrote:
>
> That means, that I am already using the newest version. Thats bad news, no chance that the problem has already been solved.
>
>
>
> ________________________________
> Von: FSL - FMRIB's Software Library <[log in to unmask]> im Auftrag von Stephen Smith <[log in to unmask]>
> Gesendet: Donnerstag, 8. Dezember 2016 08:25
> An: [log in to unmask]
> Betreff: Re: [FSL] AW: fix error No valid labelling file specified
>
> Hi - 1.062beta *is* the current download - the link is on the user-guide page not the overview page:
> https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/FIX/UserGuide
>
> Cheers
>
>
>
> On 8 Dec 2016, at 07:23, Parzer, Peter <[log in to unmask]<mailto:[log in to unmask]>> wrote:
>
> Hi Kathryn,
>
> no, I have no solution yet. On the FIX Wiki-page https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/FIX is an announcement of a new version 1.062 beta, but there is no download link for this new version. Maybe the problem is solved in the new version. I will try it as soon as someone at FMRIB kindly provide us with a download link.
>
> Peter
>
> ________________________________________
> Von: FSL - FMRIB's Software Library <[log in to unmask]<mailto:[log in to unmask]>> im Auftrag von Kathryn Broadhouse <[log in to unmask]<mailto:[log in to unmask]>>
> Gesendet: Mittwoch, 7. Dezember 2016 22:42
> An: [log in to unmask]<mailto:[log in to unmask]>
> Betreff: Re: [FSL] fix error No valid labelling file specified
>
> Hi Peter,
>
> I have been struggling with this same issue. Do you have a solution by chance?
>
> best wishes
>
> Kathryn
>
>
> Dr Kathryn Broadhouse | Postdoctoral Research Fellow
> Regenerative Neuroscience Group
> Brain and Mind Centre
> The University of Sydney
> Level 4 Building K | 94 Mallett St Camperdown | NSW | 2050
>
> ________________________________________
> From: FSL - FMRIB's Software Library [[log in to unmask]<mailto:[log in to unmask]>] on behalf of Parzer, Peter [[log in to unmask]<mailto:[log in to unmask]>]
> Sent: Thursday, December 08, 2016 2:07 AM
> To: [log in to unmask]<mailto:[log in to unmask]>
> Subject: [FSL] fix error No valid labelling file specified
>
> Hi,
>
> I have been using fix1.06 for some time now without any problems, but since an update of R from 3.3.1 to 3.3.2 fix is failing with the error message "No valid labelling file specified". The tail of fix_2b_predict.log is:
>
> for(indx in c(1:6)) {
> + # SVM
> + eval(parse(text = paste("svm.rbf.prd",indx," <- attributes(predict(svm.rbf",indx,", test.data.",indx,", probability=T))$probabilities[,2]", sep = "")))
> + eval(parse(text = paste("svm.lin.prd",indx," <- attributes(predict(svm.lin",indx,", test.data.",indx,", probability=T))$probabilities[,2]", sep = "")))
> + eval(parse(text = paste("svm.pol.prd",indx," <- attributes(predict(svm.pol",indx,", test.data.",indx,", probability=T))$probabilities[,2]", sep = "")))
> +
> + # Tree
> + eval(parse(text = paste("ctree", indx, " = ctree", indx, "@update()", sep = "")))
> + eval(parse(text = paste("ctree.prd.test",indx," <- treeresponse(ctree",indx,", newdata = test.data.",indx,")", sep = "")))
> + eval(parse(text = paste("ctree.prob.test",indx," <- c(1:length(ctree.prd.test",indx,"))", sep = "")))
> + eval(parse(text = paste("for(i in c(1:length(ctree.prob.test",indx,"))){ctree.prob.test",indx,"[i] <- ctree.prd.test",indx,"[[i]][2]}", sep = "")))
> +
> + # KNN
> + eval(parse(text = paste("tmp <- knn(train.data.",indx,"[,-dim(train.data.",indx,")[2]], test.data.",indx,", train.data.",indx,"[,dim(train.data.",indx,")[2]], k = k.knn, prob = T)", sep = "")))
> + eval(parse(text = paste("knn.test",indx," <- attributes(tmp)", sep = "")))
> + eval(parse(text = paste("knn.test",indx,"$prob[tmp==0] <- 1-knn.test",indx,"$prob[tmp==0]", sep = "")))
> + }
> Error in ctreefit(object = object, controls = controls, weights = weights, :
> no slot of name "remove_weights" for this object of class "TreeGrowControl"
> Calls: eval -> eval -> <Anonymous> -> ctreefit -> .Call
> Execution halted
>
>
>
>
> ---------------------------------------------------------------------------
> Stephen M. Smith, Professor of Biomedical Engineering
> Head of Analysis, Oxford University FMRIB Centre
>
> FMRIB, JR Hospital, Headington, Oxford OX3 9DU, UK
> +44 (0) 1865 222726 (fax 222717)
> [log in to unmask]<mailto:[log in to unmask]> http://www.fmrib.ox.ac.uk/~steve
> ---------------------------------------------------------------------------
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