We're happy to add some more data to our Wiki on benchmark results
achieved by others.
S
On 12/02/2016 04:17 PM, Matthew H. Cahn wrote:
> Ah, there is one for “2D” — I missed that. Thanks very much.
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> Best,
> Matthew
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> || Matthew Cahn | Linux Administrator | Dept. of Molecular Biology / Research Computing | Princeton University | (609) 258-5404 | [log in to unmask]<mailto:[log in to unmask]> ||
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> On Dec 2, 2016, at 5:02 AM, [log in to unmask]<mailto:[log in to unmask]> wrote:
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> Hi Matthew,
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> There is one benchmark result for Class2D, at the bottom of the table of results from pcterm48. It's surprisingly well hidden in plain sight!
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> Best wishes,
> Colin
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> --
> Colin Palmer
> CCP-EM
> Research Complex at Harwell
> Harwell Science & Innovation Campus
> Didcot OX11 0FA
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> ________________________________
> From: Collaborative Computational Project in Electron cryo-Microscopy [[log in to unmask]<mailto:[log in to unmask]>] on behalf of Matthew H. Cahn [[log in to unmask]<mailto:[log in to unmask]>]
> Sent: 01 December 2016 22:49
> To: [log in to unmask]<mailto:[log in to unmask]>
> Subject: [ccpem] RELION benchmark clarification
>
> Hi, I'd just like to make sure I understand the RELION benchmark timings on this page: http://www2.mrc-lmb.cam.ac.uk/relion/index.php/Benchmarks_%26_computer_hardware. The timings are all identified as “Class3D”. So I presume they are for the command relion_refine_mpi with the arguments given under “3D classification” (plus the “Additional options” that are specified with the timings). And they do not include running the command with the “2D classification” arguments. Is that correct? Seems pretty obvious, but I’d like to be sure before I buy hardware.
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> Thanks very much,
> Matthew
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> || Matthew Cahn | Linux Administrator | Dept. of Molecular Biology / Research Computing | Princeton University | (609) 258-5404 | [log in to unmask]<mailto:[log in to unmask]><mailto:[log in to unmask]> ||
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--
Sjors Scheres
MRC Laboratory of Molecular Biology
Francis Crick Avenue, Cambridge Biomedical Campus
Cambridge CB2 0QH, U.K.
tel: +44 (0)1223 267061
http://www2.mrc-lmb.cam.ac.uk/groups/scheres
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