Dear Luca,
Brain and/or intracranial masks can be obtained in a number of ways.
Try:
Keihaninejad S et al. NI 2010
Heckemann RA et al. PLoS ONE 2015
Malone IB et al. NI 2015
Your choices will depend on what MRIs/field strenghts you have, whether you need a brain mask or also an intracranial one, and whether you need an anatomical segmentation as well.
Hope this helps,
All the best,
Alexander
-----------------------------------------
Alexander Hammers, MD PhD
Professor (Honorary Consultant) of Imaging and Neuroscience
Head of PET Imaging Centre
Division of Imaging Sciences and Biomedical Engineering
King's College London
St Thomas' Hospital, London
Telephone +44-(0)20 7188 8364 (PA Viviane Schroeder)
Email [log in to unmask]
> On 21 Nov 2016, at 12:14, PRESOTTO LUCA <[log in to unmask]> wrote:
>
> Dear experts,
>
> I was wondering... Is there a way to get a mask that includes only neurological structures after the segmentation/normalization procedure, in native space?
> Or should I inverse-normalize an standardized mask in the MNI space? Or should I just sum c1+c2+c3 from the segmentation? I was looking for the most elegant/streamlined process.
>
> Thank you,
> Luca
>
>
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