Hi,
I'm trying to resample my EPI data to my template. Running featregapply inputting only the feat folder works, but when I specify the image I want resampled, I get the following error.
FATAL ERROR ENCOUNTERED:
COMMAND:
/usr/local/fsl/bin/applywarp --ref=reg/standard --in=subj18_epi_scrubbed_denoised3.nii.gz --out=frgrot_DMsfzM --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=spline
ERROR MESSAGE:
Image Exception : #22 :: ERROR: Could not open image subj18_epi_scrubbed_denoised3
libc++abi.dylib: terminating with uncaught exception of type RBD_COMMON::BaseException
END OF ERROR MESSAGE
Image Exception : #22 :: ERROR: Could not open image subj18_epi_scrubbed_denoised3
libc++abi.dylib: terminating with uncaught exception of type RBD_COMMON::BaseException
while executing
"fsl:exec "${FSLDIR}/bin/applywarp --ref=$ref --in=$in --out=$TMPNAM --warp=reg/highres2standard_warp $PREMAT --interp=$interp""
(procedure "runflirt" line 17)
invoked from within
"runflirt $theim $REF $theim example_func spline float"
("for" body line 9)
invoked from within
"for { set i 1 } { $i < [ llength $argv ] } { incr i 1 } {
if { ! [ string compare [ lindex $argv $i ] "-l" ] } {
incr i 1
set theim [ ..."
(file "/usr/local/fsl/bin/featregapply" line 206)
I've tried inputting a single-volume image instead and tried 3D and 4D images both inside and outside the feat folder, but the same error appears each time. Any idea what is causing the error?
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