Dear Experts,
I am setting up FSL tools for the first time. I am downloading them onto Umbunto. I have my own practice data that has been vetted already on another machine prior.
It seems to unpack correctly, but when I go to run Melodic the error I get is pasted below. Please, any ideas on what I may be missing here?
Thank you so much!
Varina
Progress Report / Log
Started at ד' × ×•×‘ 9 20:55:36 IST 2016
Main script
/bin/cp /tmp/feat_ch4rwx.fsf design.fsf
mkdir .files;cp /usr/share/fsl/4.1/doc/fsl.css .files;ln -s /usr/share/fsl/4.1/doc/images .files/images
/usr/share/fsl/4.1/bin/fsl_sub -T 30 -l logs -N feat2_pre /usr/share/fsl/4.1/bin/feat /home/yoav/Documents/AdultNormalMale/Nifti2/Rest1_Mo-1+.ica/design.fsf -D /home/yoav/Documents/AdultNormalMale/Nifti2/Rest1_Mo-1+.ica -I 1 -prestats
10804
/usr/share/fsl/4.1/bin/fsl_sub -T 30 -l logs -N feat3_reg -j 10804 /usr/share/fsl/4.1/bin/feat /home/yoav/Documents/AdultNormalMale/Nifti2/Rest1_Mo-1+.ica/design.fsf -D /home/yoav/Documents/AdultNormalMale/Nifti2/Rest1_Mo-1+.ica -I 1 -reg
11176
Prestats
/usr/share/fsl/4.1/bin/fslmaths /home/yoav/Documents/AdultNormalMale/Nifti2/Rest1 prefiltered_func_data -odt float
Total original volumes = 300
Deleting 5 volume(s) - BE WARNED for future analysis!
/usr/share/fsl/4.1/bin/fslroi prefiltered_func_data prefiltered_func_data 5 295
Killed
/usr/share/fsl/4.1/bin/fslroi prefiltered_func_data example_func 147 1
/usr/share/fsl/4.1/bin/mcflirt -in prefiltered_func_data -out prefiltered_func_data_mcf -mats -plots -refvol 147 -rmsrel -rmsabs
refnum = 147
Original_refvol = 147
/bin/mkdir -p mc ; /bin/mv -f prefiltered_func_data_mcf.mat prefiltered_func_data_mcf.par prefiltered_func_data_mcf_abs.rms prefiltered_func_data_mcf_abs_mean.rms prefiltered_func_data_mcf_rel.rms prefiltered_func_data_mcf_rel_mean.rms mc
/usr/share/fsl/4.1/bin/fsl_tsplot -i prefiltered_func_data_mcf.par -t 'MCFLIRT estimated rotations (radians)' -u 1 --start=1 --finish=3 -a x,y,z -w 640 -h 144 -o rot.png
/usr/share/fsl/4.1/bin/fsl_tsplot -i prefiltered_func_data_mcf.par -t 'MCFLIRT estimated translations (mm)' -u 1 --start=4 --finish=6 -a x,y,z -w 640 -h 144 -o trans.png
/usr/share/fsl/4.1/bin/fsl_tsplot -i prefiltered_func_data_mcf_abs.rms,prefiltered_func_data_mcf_rel.rms -t 'MCFLIRT estimated mean displacement (mm)' -u 1 -w 640 -h 144 -a absolute,relative -o disp.png
/usr/share/fsl/4.1/bin/slicetimer -i prefiltered_func_data_mcf --out=prefiltered_func_data_st -r 2.0000016689 --odd
/usr/share/fsl/4.1/bin/fslmaths prefiltered_func_data_st -Tmean mean_func
++ WARNING: nifti_read_buffer(prefiltered_func_data_st.nii.gz):
data bytes needed = 947200
data bytes input = 7264
number missing = 939936 (set to 0)
++ WARNING: nifti_read_buffer(prefiltered_func_data_st.nii.gz):
data bytes needed = 947200
data bytes input = 0
number missing = 947200 (set to 0)
++ WARNING: nifti_read_buffer(prefiltered_func_data_st.nii.gz):
data bytes needed = 947200
data bytes input = 0
number missing = 947200 (set to 0)
++ WARNING: nifti_read_buffer(prefiltered_func_data_st.nii.gz):
data bytes needed = 947200
data bytes input = 0
number missing = 947200 (set to 0)
++ WARNING: nifti_read_buffer(prefiltered_func_data_st.nii.gz):
data bytes needed = 947200
data bytes input = 0
number missing = 947200 (set to 0)
++ WARNING: nifti_read_buffer(prefiltered_func_data_st.nii.gz):
data bytes needed = 947200
data bytes input = 0
number missing = 947200 (set to 0)
++ WARNING: nifti_read_buffer(prefiltered_func_data_st.nii.gz):
data bytes needed = 947200
data bytes input = 0
number missing = 947200 (set to 0)
++ WARNING: nifti_read_buffer(prefiltered_func_data_st.nii.gz):
data bytes needed = 947200
data bytes input = 0
number missing = 947200 (set to 0)
++ WARNING: nifti_read_buffer(prefiltered_func_data_st.nii.gz):
data bytes needed = 947200
data bytes input = 0
number missing = 947200 (set to 0)
++ WARNING: nifti_read_buffer(prefiltered_func_data_st.nii.gz):
data bytes needed = 947200
data bytes input = 0
number missing = 947200 (set to 0)
++ WARNING: nif
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