Hey jesper, is there an option to recompile eddy_cuda for cuda 8.0.44 that
can run on ubuntu 16.04? eddy_cuda7.5 is a screamer on 14.04 - well done!
Alas no nvidia cuda 7.5 for 16.04, unless Someone has a viable workaround
that’s also compatible with pycuda…
Jeff
On 11/5/16, 1:41 AM, "Jesper Andersson" <[log in to unmask]>
wrote:
>Hi there Ruskin,
>
>yes, the new, and future, releases of eddy is either OpenMP or CUDA. But
>the OpenMP one doesn’t need any special hardware, it simply uses more
>than one thread. Or more than one CPU on a multi-cpu machine. If you want
>to restrict eddy_openmp to use only one thread you simply do
>
>export OMP_NUM_THREADS=1
>
>before launching eddy_openmp.
>
>I hope that was clear?
>
>Jesper
>
>On 4 Nov 2016, at 22:22, R Hunt <[log in to unmask]> wrote:
>
>> Hi, Jesper.
>>
>> I need some clarification about using the --repol flag under 5.0.9.
>>
>> Our sys admin installed 5.0.9 on our local cluster, but for some reason
>>there was no eddy command. I saw that you issued patches for eddy, so I
>>asked for them to be installed. After installation, eddy_cuda,
>>eddy_cuda7.5, and eddy_openmp are available, but not eddy. Is that
>>what's expected?
>>
>> Also, I get the impression from other posts that the --repol flag is
>>only available with the cuda or openmp versions of eddy. Is that
>>correct, or is there (will there be) a non-gpu, non-parallel version of
>>eddy that has this flag under 5.0.9?
>>
>> Thanks,
>> Ruskin8.0.44
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