Dear Claudia,
Have you aligned images per subject to each other? You can do that via
Display options in SPM.
Best,
Jacek M.
On 2016-10-05 12:43, Claudia Piervincenzi wrote:
> Dear all,
>
> I'm using the latest version of CAT12 r1012 (2016-09-19) and MATLAB version R2011b
>
> When I try to run the first module of preprocessing (Segment longitudinal data) I get the following error message:
>
> ------------------------------------------------------------------------
> Running job #1
> ------------------------------------------------------------------------
> Running 'Segment longitudinal data'
>
>
> ------------------------------------------------------------------------
> Running job #2
> ------------------------------------------------------------------------
> Running 'Longitudinal Rigid Registration'
> Estimated noise sd for "D:\prova_qmt_t1\MB12_T0.nii,1" = 10.2649
> Estimated noise sd for "D:\prova_qmt_t1\MB12_T1.nii,1" = 9.40958
> Estimated noise sd for "D:\prova_qmt_t1\MB12_T2.nii,1" = 9.95733
> APP:
> Initialize 5s
> Estimate background 3s
> Initial correction 8s
> Refine background 5s
> Final correction 7s
> Background correction 1s
> Final scaling 4s
> 57s
> Failed 'Longitudinal Rigid Registration'
> Error using &
> Matrix dimensions must agree.
> In file "C:\spm12\toolbox\cat12\cat_vol_groupwise_ls.m" (???), function "cat_vol_groupwise_ls" at line 276.
> In file "C:\spm12\toolbox\cat12\cat_vol_series_align.m" (???), function "cat_vol_series_align" at line 31.
>
> No executable modules, but still unresolved dependencies or incomplete module inputs.
> The following modules did not run:
> Failed: Longitudinal Rigid Registration
> Skipped: CAT12: Segmentation
> Skipped: CAT12: Segmentation
> Skipped: Apply deformations (many images)
> Skipped: Move/Delete Files
> Skipped: Longitudinal Rigid Registration
> Skipped: CAT12: Segmentation
> Skipped: CAT12: Segmentation
> Skipped: Apply deformations (many images)
> Skipped: Move/Delete Files
>
> Failed 'Segment longitudinal data'
> Error using MATLABbatch system
> Job execution failed. The full log of this run can be found in MATLAB command window, starting with the lines (look for the line showing the exact #job as displayed in this error message)
> ------------------
> Running job #2
> ------------------
>
>
> The following modules did not run:
> Failed: Segment longitudinal data
>
>
>
>
> I tryed with different set of images (from different scanners) and I always get the same error.
> Thank you in advance for your help!
>
> Best,
>
> Claudia
|