Hi Anderson,
I am using palm for the first time, trying to run these designs.... and I received the following error:
"Warning: you chose to correct over contrasts, or run NPC between contrasts, but with the design(s) and contrasts given it is not possible to run synchronised permutations without ignoring repeated elements in the design matrix. To solve this, adding the option "-cmcx" automatically. "
I am not sure what this warning message means, and whether this is a problem with my design files or if this warning can be ignored. I have attached the design.mat and design.con files generated for my dataset. I used the following command for palm:
palm -i AHN_base_copes_allsubs.nii -d design1.mat -t design1.con -d design2.mat -t design2.con -d design3.mat -t design3.con -eb EB.csv -whole -within -corrcon -o mixed_effects_gPPI_N73_AHN_base_results -n 2000
Any insight would be helpful!
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