Hi all,
When I run 3D-autorefine, it stuck at maximization step of it015. Even I repeated it by continuing from it014 using different threads number to avoid running out of RAM, it always stopped at maximization of it015. Use top to check the job, it was still running, just run forever. The memory usage for each thread was about 40%.
According a posted question before (https://www.jiscmail.ac.uk/cgi-bin/webadmin?A2=ind1511&L=CCPEM&D=0&P=20447), I talked to our sys admin, he said we use InfiniBand MPI, which doesn't use TCP.
Then I checked my particles carefully, delete some more 'bad' particles, repeated the auto-refine. This time it stuck at it013.
What should I do now?
Any suggestion is appreciated. Thanks,
Fuxing
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