Dear FSL team,
I would appreciate if I could get some feedback about an issue that follows the application of eddy, to which the output of topup is fed as input.
I run topup on two b = 0 images (blip up / down) and provide the output to eddy. My instruction looks something like:
eddy --imain=dwi.nii --mask=mask.nii --index=dwi.idx --acqp=dwi.acq --bvecs=dwi.bvec --bvals=dwi.bval --topup=topup_basename --out=dwiall_correct.nii
and I get this error:
terminate called after throwing an instance of 'TOPUP::TopupFileIOException'
what(): TopupFileIO:: msg=MovePar2Matrix: mp must have 6 elements
Aborted (core dumped)
Any clue about what it could be? Some information:
- I am using fsl-5.0.2.2
- Notice that in dwi.nii all images are "blip up" (the blip down used for topup is not included, and including it and changing the --acqp and ---index files accordingly does not help)
- I don't seem to have the option --field in my eddy.
Any feedback would be very useful. Thanks a lot in advance.
Best,
Francesco
|