Dear admin,
I have extracted an ROI image in FSL and computed its mean, median and standard deviation for non-zero voxel using
the following option.
fslmaths all_OD_skeletonised.nii.gz -mas ROI_01_mas.nii.gz -thr 0 all_OD_skeletonised_ROI_01.nii.gz
fslstats -t all_OD_skeletonised_ROI_01.nii.gz -M > ROI_01_OD_M.txt
fslstats -t all_OD_skeletonised_ROI_01.nii.gz -S > ROI_01_OD_S.txt
fslstats -t all_OD_skeletonised_ROI_01.nii.gz -P 50 > ROI_01_OD_P.txt
Is there is any way to WINSORIZE an image for non-zero voxel in FSL. I am trying a method based on ROI analysis and for that reason winsorization of image is important. fslstats doesn't provide that option. Please help me out.
Kind regards
sourajit
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