Hi experts
I've searched around the forum a bit but seem to be getting slightly differing answers to my question.
I'm collecting multi b-value diffusion data (using a NODDI sequence). I have the matlab toolbox to reconstruct NODDI specific parameters (ODI, NDI etc) but I was wondering about the accuracy of using FSL to reconstruct my FA and MD maps.
The sequence I use is a 2 shell sequence with 36 directions at b=1000 (+4 b0) and 72 directions at b=2000 (+4 b0). The two shells are collected interleaved and the data is processed in a single 4d data file.
The resulting MD and FA maps look great but I want to ensure that FSL is reconstructing these maps accurately before proceeding with my quantitative data analysis.
Thanks
Patrick McCunn
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