Hi Joel,
The accessibility of each residue in the PDB is stored in the PDBFINDER2
databank: http://swift.cmbi.ru.nl/gv/pdbfinder/
You can parse that to get your answer quite easily, I think.
Cheers,
Robbie
> -----Original Message-----
> From: CCP4 bulletin board [mailto:[log in to unmask]] On Behalf Of
> Joel Sussman
> Sent: Sunday, September 18, 2016 16:08
> To: [log in to unmask]
> Subject: Re: [ccp4bb] How to determine the number of occurrences of a
> particular type of amino acid on the surface of a protein
>
> 18-Sep-2016
> Is there a simple way to determine (calculate) the number of occurrences
of
> a particular type of amino acid on the surface of a protein, e.g. How many
> Tyr are on the surface of a particular protein?
> Any help, most appreciated.
> Thanks
> Joel
>
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> Prof. Joel L. Sussman
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