Hi all,
I am using the plugin autoPtx for automated tractography in FSL (using linux) and after the prepocessing steps are done I ran the LaunchTractography script as indicated on the webpage.
The only problem is that the script doesn't give any output in the terminal (maybe this is not a problem) and only a folder is created in my directory with the first track in the structure List (ar_l) I tried to modify the structure list file (since I only need to extract the superior lingitudinal fasciculi) but again only the first tract of the list is generate d and I can't visualize it either since I get an error saying:
Cannot open volume tracts/bedpostx//tracts/tractsNorm for reading! (infatti TractsNorm non era li')
ERROR: Could not open file
==ERROR== Header not recognized. Exiting..
(indeed tractsNorm is not there... I get the feeling that th script doesn't read the all list and consequently is run partially [e.g. Maybe Tracts Norm is generated at the end])
What could be the problem??
Any suggestions from more expert users??
Thank you so much in advance for the help
Best,
Cecilia
|