18-Sep-2016 19:20 Rehovot
Dear Robbie
Thanks very much, looks just terrific.
best regards,
Joel
> On 18Sep, 2016, at 17:33, Robbie Joosten <[log in to unmask]> wrote:
>
> Hi Joel,
>
> The accessibility of each residue in the PDB is stored in the PDBFINDER2
> databank: http://swift.cmbi.ru.nl/gv/pdbfinder/
> You can parse that to get your answer quite easily, I think.
>
> Cheers,
> Robbie
>
>> -----Original Message-----
>> From: CCP4 bulletin board [mailto:[log in to unmask]] On Behalf Of
>> Joel Sussman
>> Sent: Sunday, September 18, 2016 16:08
>> To: [log in to unmask]
>> Subject: Re: [ccp4bb] How to determine the number of occurrences of a
>> particular type of amino acid on the surface of a protein
>>
>> 18-Sep-2016
>> Is there a simple way to determine (calculate) the number of occurrences
> of
>> a particular type of amino acid on the surface of a protein, e.g. How many
>> Tyr are on the surface of a particular protein?
>> Any help, most appreciated.
>> Thanks
>> Joel
>>
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>> Prof. Joel L. Sussman
> [log in to unmask]
>> <mailto:[log in to unmask]> www.weizmann.ac.il/~joel
>> <http://www.weizmann.ac.il/~joel>
>> Dept. of Structural Biology tel: +972 (8) 934 6309
>> www.weizmann.ac.il/ISPC <http://www.weizmann.ac.il/ISPC>
>> Weizmann Institute of Science fax: +972 (8) 934 6312 www.proteopedia.org
>> <http://www.weizmann.ac.il/~joel>
>> Rehovot 76100 ISRAEL mob: +972 (50) 510 9600
>>
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