Dear Julien,
if you clear your browser cache and go to the latest help pages you will find a section called “Understanding eddy output” which should have the information you need.
I am still in the process of updating so there might still be some contradicting information, but it’s getting there.
Jesper
On 18 Aug 2016, at 13:43, Julien Besle <[log in to unmask]> wrote:
> Hi
>
> One thing that's not clear in the online documentation of eddy is which
> bvecs file should be used with the corrected DW images: the original
> .bvec file or the eddy-rotated one?
>
> The last section of the FAQ suggests that one should rotate the original
> bvecs afer running eddy? It says that eddy outputs two files, including
> one with rotation parameters which should be used to rotate the bvecs.
> However, when I run eddy, I get 8 output files, including one named
> ?.eddy_rotated_bvecs. Are these the eddy-rotated bvecs?
>
> This is all very confusing
>
> Thanks
>
> Julien
>
>
>
> --
> ------------------------------------------------------
> Julien Besle
> Senior Investigator Scientist
> MRC Institute of Hearing Research
> School of Medicine
> The University of Nottingham
> University Park
> Nottingham NG7 2RD
> United Kingdom
>
> tel: +44 (0)115 748 6918
> web: www.nottingham.ac.uk/medicine/people/julien.besle
> www.nottingham.ac.uk/mrcihr
> ------------------------------------------------------
>
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