Hi Adarsh
Sorry was away from the list and returned today.
.Trash does not sound good.
Perhaps try from scratch:
- open terminal and mkdir new folder and place all your FA files in it (alternatively, you can move your previous results from tbss_1_preproc to this new destination)
- follow carefully the instructions on tbss user guide, being mindful of where you are in the directory structure and run tbss_2_reg
- what should happen is your workstation will take on a whole bunch of FNIRT operations
- warp.msf files should have some content in them (not 0 bytes).
The key here is that you start fresh from a new directory and follow the commands exactly like the user guide so that your .command is created in the correct folder.
Good luck!
Danny
On 2016-08-14, at 3:35 PM, Adarsh Nellore wrote:
> Hi Danny,
>
> Thanks a lot for your reply. For some reason I'm finding it in a .Trash-1000 directory.
> I'm running this in Ubuntu.
>
> Also, now whenever I do tbss_2_reg, I'm not getting any errors but I also don't think there is any registration happening since my warp.msf files contain nothing (they are 0 bytes) and when I run tbss_3_reg, it can't find the warp results. I'd appreciate any guidance on what's going wrong.
>
> Thanks,
> Adarsh
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