Dear FSL experts,
I am running slice-timing correction but unable to contact physician to know the slice order. However, in the protocol summary, I've found this information:
IMAGING PARAMETERS
Imaging Mode 2D
Pulse Sequence Gradient Echo
Imaging Options MPh, EPI
FMRI
PSD Trigger Internal
Slice Order Interleaved
View Order Bottom/Up
# of Repetitions REST 0
# of Repetitions ACTIVE 0
SCAN RANGE
FOV 24.0
Slice Thickness 3.8
Slice Spacing 0.0
GRXOPT 0
Start Location 1 R3.4
Start Location 2 A58.1
Start Location 3 S111.3
End Location 1 R3.5
End Location 2 A27.2
End Location 3 I25.9
Number of Slices 38
MULTI-PHASE
Slice per Location 80
Phase Acquisition Order Interleaved
Delay after Acquisition Minimum
# of Acquisition 0
Given the above information, how should I specify my ocustom.txt file. Should I use the --odd option since the order is interleaved or I should manually specify slice order in the ocustom.txt file.
Any suggestion will be much appreciated.
Best regards,
Khoi
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