Dear Emily,
the previous version of eddy was not able to use a fugue style fieldmap. The patch that was released yesterday has a --field parameter that will allow you to feed a fugue style fieldmap into eddy. But please note the caveats that I warned of in my “release note” yesterday.
Jesper
On 20 Jul 2016, at 17:12, Emily S <[log in to unmask]> wrote:
> Hi,
>
> I'm having trouble running eddy to correct my DTI data. My command and compulsory files all seem to be formatted correctly, but I am getting an error:
>
> terminate called after throwing an instance of 'TOPUP: : TopupFileIOException'
> what ():
> Aborted
>
> I did not use topup for distortion correction, and instead used fugue, as my data was not acquired in two different directions. How can I fix this?
>
>
> I'm an intern just starting out on FSL, so any input would be greatly appreciated.
>
> Thanks,
> Emily
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